Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_N21
(654 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12950| Best HMM Match : GST_C (HMM E-Value=6.7) 44 1e-04
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0) 32 0.47
SB_44069| Best HMM Match : Rad21_Rec8 (HMM E-Value=0.0016) 31 1.1
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_26019| Best HMM Match : F5_F8_type_C (HMM E-Value=2.6e-29) 30 1.4
SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042) 29 2.5
SB_40820| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 29 3.3
SB_25427| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_9469| Best HMM Match : IRK (HMM E-Value=0) 28 7.6
SB_47114| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_14261| Best HMM Match : ig (HMM E-Value=0) 28 7.6
>SB_12950| Best HMM Match : GST_C (HMM E-Value=6.7)
Length = 253
Score = 43.6 bits (98), Expect = 1e-04
Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 10/146 (6%)
Frame = +1
Query: 139 ANGDVPEIELIIKASTIDGRRKGACLFCQEYFMDLYLLAELKTISLKVTTVDMQKPPPDF 318
A +P +EL +KAST+D + GA + C M + LK + +K VD K +
Sbjct: 2 AEETIPGVELFVKASTLDCQSLGADIQCHRIMM----MFALKGLPIKTFNVDTIK-KTNV 56
Query: 319 RTNFE-ATHPPILIDNGLAILEN-EKIERHIMKSVPGGHN---LFVQDKEVASLI----- 468
+ +F P + +DNG +L++ ++IER K + L +K++ S +
Sbjct: 57 QLHFPYKNFPTLTLDNGAEVLDDLDEIERRFEKLSETNQSIPKLACTNKDILSFVNVGPG 116
Query: 469 ENLYSKLKLVLVRKDEQKSAALRAHL 546
+Y K + + ++ AL+ L
Sbjct: 117 SKIYQKFNYFIKNRAQEGEEALKTQL 142
>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 2411
Score = 31.9 bits (69), Expect = 0.47
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = -3
Query: 538 LVTPLISVHLCEPAPASVLNTGSRLETRPPCPARIGCVPLARTS*CDVRSFRSQVSPAH 362
L+T S +C A L TGS LE R CP+ C+P A+ D + ++ S H
Sbjct: 660 LITTPCSARICR-YHAKCLYTGSTLECR--CPSESDCLPAAKVCGYDGKVMKTYQSQCH 715
>SB_44069| Best HMM Match : Rad21_Rec8 (HMM E-Value=0.0016)
Length = 800
Score = 30.7 bits (66), Expect = 1.1
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Frame = -2
Query: 302 FCMSTVVTFKLIVLSSANRYRSMKYS*QNRQAPF-RLPSIVDA--FIISSISGTSPLAVP 132
FC VV LI L+ ++RY M +PF LPS + + +S+ G+ + P
Sbjct: 271 FCEDRVVNEHLIALAKSDRYLRMPLP----LSPFLTLPSPISSPEHRMSTGGGSEIMRSP 326
Query: 131 FSAISSDIVI*ETLEFSKEVP 69
F A + DI I E ++F+K P
Sbjct: 327 FQAEAKDITIAE-IDFTKLSP 346
>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3142
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = -2
Query: 230 YS*QNRQAPFRLPSIVDAFIISSISGTSPLAVPFSAISSDI 108
+S Q APF LPS +F SS PL+ FS S+DI
Sbjct: 2922 HSTQPANAPFTLPSTSRSFNTSSPPSPKPLSSYFSRSSTDI 2962
>SB_26019| Best HMM Match : F5_F8_type_C (HMM E-Value=2.6e-29)
Length = 438
Score = 30.3 bits (65), Expect = 1.4
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = -2
Query: 347 GGCVASKLVRKSGGGFCMSTVVTFKL--IVLSSANRYRSMKYS*QNRQAPFRLPSIVDAF 174
GGC A +L + G + +TVVT KL I+ SSA R++ + Q+ + R+
Sbjct: 212 GGCAARRLSWEFYGNYDNNTVVTHKLTPIISSSAIRFQPRQ---QHSRVAMRVEIYTYGI 268
Query: 173 IISSISGTSPLAVPFSAISS 114
+ S G + VP I+S
Sbjct: 269 ALPSDLGIASGEVPDDKITS 288
>SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)
Length = 4607
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 262 KTISLKVTTVDM-QKPPPDFRTNFEATHPPILIDNGLAILENEKIERHIMK 411
+T SL T+ + Q P +FR H +L+ N + +++NEK+ + + K
Sbjct: 3896 ETFSLTDETIAIRQLTPVEFRVLHLLIHSLLLMGNAINLIDNEKLAKFLFK 3946
>SB_40820| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 526
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +2
Query: 500 WFAKMNRNQRRYELISXRIDGLLERRETRFLTGD---TMCC 613
WF ++ EL+ R DGL RE+R GD ++CC
Sbjct: 203 WFHGKIEREKSEELLQPRTDGLFLVRESRNYVGDYTLSVCC 243
>SB_25427| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1198
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +1
Query: 466 IENLYSKLKLVLVRKDEQKSAALRAHLGTHRWTSRTQGDQVPNGR 600
I+NL + K L + A +R HR T+RTQ DQ+ GR
Sbjct: 1142 IDNLREETKKPLTKPHADYEAPVRPQ--GHRKTTRTQEDQIATGR 1184
>SB_9469| Best HMM Match : IRK (HMM E-Value=0)
Length = 520
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/64 (28%), Positives = 26/64 (40%)
Frame = -2
Query: 344 GCVASKLVRKSGGGFCMSTVVTFKLIVLSSANRYRSMKYS*QNRQAPFRLPSIVDAFIIS 165
GCV + GG +C+ V +F L S ++ Y RQ P + I
Sbjct: 151 GCVWYLITYLRGGNYCVHNVESFVTAFLFSLETQTTIGYG--GRQISGECPEAIILLNIQ 208
Query: 164 SISG 153
S+SG
Sbjct: 209 SLSG 212
>SB_47114| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 623
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 491 SWCWFAKMNRNQRRYELISXRI-DGLLERRETRFLTGD 601
+W ++ N RRYEL+ + +G ER T F + D
Sbjct: 311 NWAVYSMYNTKSRRYELVVLELYEGYEERNSTAFSSMD 348
>SB_14261| Best HMM Match : ig (HMM E-Value=0)
Length = 1337
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 208 ACLFCQEYFMDLYLLAELKTISLKV 282
ACL+ QEYF D+ LL + I+ +V
Sbjct: 1264 ACLWRQEYFNDILLLTDNNPITTRV 1288
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,864,462
Number of Sequences: 59808
Number of extensions: 441388
Number of successful extensions: 1118
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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