Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_N17
(443 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41558-4|AAK39246.1| 117|Caenorhabditis elegans Ribosomal prote... 113 5e-26
Z81486-10|CAB03993.3| 681|Caenorhabditis elegans Hypothetical p... 29 1.1
AF016428-2|AAO26002.1| 316|Caenorhabditis elegans Serpentine re... 27 4.6
AC024776-7|AAK68469.1| 411|Caenorhabditis elegans Nuclear pore ... 27 4.6
AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore ... 27 4.6
U00048-11|AAB53833.1| 995|Caenorhabditis elegans Hypothetical p... 27 6.1
Z81085-3|CAB03115.1| 769|Caenorhabditis elegans Hypothetical pr... 27 8.1
U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily ass... 27 8.1
DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein. 27 8.1
AC084197-45|AAK68589.4| 751|Caenorhabditis elegans Hypothetical... 27 8.1
>U41558-4|AAK39246.1| 117|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 25 protein.
Length = 117
Score = 113 bits (272), Expect = 5e-26
Identities = 62/118 (52%), Positives = 70/118 (59%)
Frame = +1
Query: 22 MPPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXXLNNQVLFDKPTYEKLYKE 201
MPPKKD K P LNN VLFD+ TY+KLYKE
Sbjct: 1 MPPKKDPKGGKAPPSKKKEGSGGGKAKKKKWSKGKVRDK---LNNMVLFDQATYDKLYKE 57
Query: 202 VPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDDPV 375
V YKLITP+VVSERLKVR SLA+ L EL+ KGL+K VV HHGQV+YTRATK D +
Sbjct: 58 VITYKLITPSVVSERLKVRASLAKAGLKELQAKGLVKCVVHHHGQVVYTRATKEADVI 115
>Z81486-10|CAB03993.3| 681|Caenorhabditis elegans Hypothetical
protein C53A5.13 protein.
Length = 681
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 33 EGREGFGQTASKNTEEEGRIRWRQSQEEEVVQRK 134
E REG G + + RIRW+ +EE+V R+
Sbjct: 25 EDREGDGVDVIEVRNDAIRIRWKHDSDEEIVTRQ 58
>AF016428-2|AAO26002.1| 316|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 65 protein.
Length = 316
Score = 27.5 bits (58), Expect = 4.6
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1
Query: 287 SMSALLAREPRTFNLSDTTAGVISLYCG 204
S++ ++ E F+LSDT ++ L+CG
Sbjct: 2 SVNRTISLENGKFDLSDTIVNIVELFCG 29
>AC024776-7|AAK68469.1| 411|Caenorhabditis elegans Nuclear pore
complex protein protein8, isoform a protein.
Length = 411
Score = 27.5 bits (58), Expect = 4.6
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -1
Query: 296 SLSSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNT 159
S++S+ AL A + NL TTA + LY S S + + NN+
Sbjct: 313 SITSIKALEASQSAALNLVATTAKGVRLYFSVSTGPQSTMAMFNNS 358
>AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore
complex protein protein8, isoform b protein.
Length = 1090
Score = 27.5 bits (58), Expect = 4.6
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -1
Query: 296 SLSSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNT 159
S++S+ AL A + NL TTA + LY S S + + NN+
Sbjct: 228 SITSIKALEASQSAALNLVATTAKGVRLYFSVSTGPQSTMAMFNNS 273
>U00048-11|AAB53833.1| 995|Caenorhabditis elegans Hypothetical
protein C05D11.1 protein.
Length = 995
Score = 27.1 bits (57), Expect = 6.1
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +1
Query: 154 NQVLFDKPTYEKLYKEVPQYKLITPAVVSERL-KVRGSL 267
N +LFD+ EKL++++ + + P V E+L +VR +L
Sbjct: 694 NCILFDELVLEKLHEKISKDVMKNPEAVLEKLEQVRSAL 732
>Z81085-3|CAB03115.1| 769|Caenorhabditis elegans Hypothetical
protein F46F3.4 protein.
Length = 769
Score = 26.6 bits (56), Expect = 8.1
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 247 LKVRGSLARRALIELREKGLIKQVVQHHGQVIYTR 351
L V+GS+ + A +ELR + Q + H + +Y R
Sbjct: 191 LNVQGSMLKEAQLELRNASMRAQSLNKHLEEMYRR 225
>U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 326 protein.
Length = 560
Score = 26.6 bits (56), Expect = 8.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 74 RRRRKDPVAAKPRRRSGP 127
RRR+ P+ A PRRR P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495
>DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein.
Length = 560
Score = 26.6 bits (56), Expect = 8.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 74 RRRRKDPVAAKPRRRSGP 127
RRR+ P+ A PRRR P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495
>AC084197-45|AAK68589.4| 751|Caenorhabditis elegans Hypothetical
protein Y73B6BL.1 protein.
Length = 751
Score = 26.6 bits (56), Expect = 8.1
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Frame = -2
Query: 205 GLPCTVSHMWV-YQTTPGCS----TCHELFLWTTSSSWLCRHRIL 86
GL + W YQ CS TC F W W CR R++
Sbjct: 353 GLSNQYTDEWYEYQPVRHCSEQDATCDSPFYWCDMKLWRCRSRVV 397
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,380,190
Number of Sequences: 27780
Number of extensions: 199620
Number of successful extensions: 595
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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