Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_N17
(443 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g34555.1 68417.m04910 40S ribosomal protein S25, putative 93 8e-20
At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E) ribo... 91 2e-19
At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B) 91 2e-19
At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A) 85 3e-17
At4g27630.1 68417.m03971 expressed protein 30 0.81
At1g14500.1 68414.m01719 ankyrin repeat family protein contains ... 29 1.9
At2g17250.1 68415.m01992 expressed protein weak similarity to Ri... 28 3.3
At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila... 27 5.7
At5g16810.1 68418.m01969 expressed protein 27 5.7
At2g23170.1 68415.m02768 auxin-responsive GH3 family protein sim... 27 7.5
At1g24706.1 68414.m03104 expressed protein 27 7.5
At5g64950.1 68418.m08170 mitochondrial transcription termination... 26 10.0
At1g48180.1 68414.m05378 expressed protein ; expression supporte... 26 10.0
>At4g34555.1 68417.m04910 40S ribosomal protein S25, putative
Length = 108
Score = 93.1 bits (221), Expect = 8e-20
Identities = 42/72 (58%), Positives = 55/72 (76%)
Frame = +1
Query: 148 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQH 327
+NN VLFD+ TY+KL E P++KLITP+++S+RL++ GSLARRA+ EL KG I+ V H
Sbjct: 37 VNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAH 96
Query: 328 HGQVIYTRATKG 363
Q IYTRAT G
Sbjct: 97 SSQQIYTRATHG 108
>At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E)
ribosomal protein S25, Lycopersicon esculentum,
PIR2:S40089
Length = 108
Score = 91.5 bits (217), Expect = 2e-19
Identities = 40/70 (57%), Positives = 55/70 (78%)
Frame = +1
Query: 148 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQH 327
+NN VLFD+ TY+KL E P++KLITP+++S+R+++ GSLARRA+ EL KG+I+ V H
Sbjct: 37 VNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAH 96
Query: 328 HGQVIYTRAT 357
Q IYTRAT
Sbjct: 97 SSQQIYTRAT 106
>At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B)
Length = 108
Score = 91.5 bits (217), Expect = 2e-19
Identities = 41/70 (58%), Positives = 55/70 (78%)
Frame = +1
Query: 148 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQH 327
+NN VLFD+ TY+KL E P++KLITP+++S+R+++ GSLARRA+ EL KGLI+ V H
Sbjct: 37 VNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAH 96
Query: 328 HGQVIYTRAT 357
Q IYTRAT
Sbjct: 97 SSQQIYTRAT 106
>At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A)
Length = 125
Score = 84.6 bits (200), Expect = 3e-17
Identities = 38/70 (54%), Positives = 53/70 (75%)
Frame = +1
Query: 148 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQH 327
+NN VLFD+ TY+KL E P++KLITP+++S+RL++ GSLAR+A+ +L KG I+ V H
Sbjct: 53 VNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRDLMVKGTIRMVSTH 112
Query: 328 HGQVIYTRAT 357
Q I TRAT
Sbjct: 113 SSQQINTRAT 122
>At4g27630.1 68417.m03971 expressed protein
Length = 348
Score = 29.9 bits (64), Expect = 0.81
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = -1
Query: 341 ITCP*CWTTCLMRPFSLSSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGL 171
I P CWTT L PF L ++ R + T V+S + +L +SY+ L
Sbjct: 4 ILSPTCWTTLLKHPFILKGFFSMPQLVSRIGVIGVTLMAVLSGFGAVNL-PYSYISL 59
>At1g14500.1 68414.m01719 ankyrin repeat family protein contains
Pfam domain, PF00023: Ankyrin repeat
Length = 436
Score = 28.7 bits (61), Expect = 1.9
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = -1
Query: 212 YCGTSLYSFSYVGLSN--NTWLFNLSRTFPLDHFFFLALPPPDPSFFFC 72
+C LY+F + + + TW F + + + + +A+ P+P F C
Sbjct: 342 FCCALLYTFCLLPIGSLFTTWFFWIGASLGVSYALAMAIISPNPLLFLC 390
>At2g17250.1 68415.m01992 expressed protein weak similarity to
Ribosome biogenesis protein MAK21 (Swiss-Prot:Q12176)
[Saccharomyces cerevisiae]
Length = 577
Score = 27.9 bits (59), Expect = 3.3
Identities = 13/47 (27%), Positives = 29/47 (61%)
Frame = +1
Query: 151 NNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIEL 291
+++ + +KPT +K E L++PA +S+R+K++ + A + + L
Sbjct: 245 SDESISEKPTDKKKKTEKGDSTLLSPATISKRMKLKFTKAWISFLRL 291
>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar to
CAF protein [Arabidopsis thaliana] GI:6102610; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain, PF03368: Domain of
unknown function, PF00636: RNase3 domain, PF00035:
Double-stranded RNA binding motif
Length = 1676
Score = 27.1 bits (57), Expect = 5.7
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = -3
Query: 327 MLDYLFDETFFPKLDECSSRQGTSDL*SFRYDSRCD*LVLWDF-LVQFLICGFIKQHLVV 151
+LDYL FF + Q T DL S ++ V F L +FL C I H V+
Sbjct: 1310 VLDYLMTSYFFTVFPKLKPGQLT-DLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVI 1368
Query: 150 QLVTNF 133
+ TNF
Sbjct: 1369 EDYTNF 1374
>At5g16810.1 68418.m01969 expressed protein
Length = 418
Score = 27.1 bits (57), Expect = 5.7
Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 15 FKDAAQEGREGFGQTAS-KNTEEEGRIRWRQSQEEEVVQRK 134
F+D ++ + QTAS K T + W ++E++++R+
Sbjct: 181 FRDGGKDSAADYAQTASEKTTRARSQGVWNPYEKEQMIKRR 221
>At2g23170.1 68415.m02768 auxin-responsive GH3 family protein
similar to auxin-responsive GH3 product [Glycine max]
GI:18591; contains Pfam profile PF03321: GH3
auxin-responsive promoter
Length = 595
Score = 26.6 bits (56), Expect = 7.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 186 LICGFIKQHLVVQLVTNFSFGPLLLLGFAAT 94
++CG + +H V++L F+ G L +GF T
Sbjct: 213 MLCGLLMRHEVLRLGAVFASGLLRAIGFLQT 243
>At1g24706.1 68414.m03104 expressed protein
Length = 1781
Score = 26.6 bits (56), Expect = 7.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 149 NLSRTFPLDHFFFLALPPPDP 87
+L ++ P DHF LPPP P
Sbjct: 1562 SLEKSHPDDHFHSQGLPPPPP 1582
>At5g64950.1 68418.m08170 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 391
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = -1
Query: 290 SSMSALLAREPRTFNLSD 237
S +++LL R+PR FNLS+
Sbjct: 196 SQLASLLRRQPRIFNLSE 213
>At1g48180.1 68414.m05378 expressed protein ; expression supported
by MPSS
Length = 239
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 245 LSDTTAGVISLYCGTSLYSFSYVGL 171
L + + +YCGTS SYVGL
Sbjct: 149 LQQDASAITGIYCGTSGEPASYVGL 173
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,974,071
Number of Sequences: 28952
Number of extensions: 183866
Number of successful extensions: 591
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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