Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_N15
         (649 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   6.6  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   8.7  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.7  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +2

Query: 374 TKPQYIYRYGIPVNLHYQ--LSCGE 442
           TKP  I +Y IPV L  +  +SC +
Sbjct: 179 TKPTAIQKYAIPVILSGRDLMSCAQ 203


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 596 WILVKNWWSLDLQKHHF 646
           W+L+KN  + D + H F
Sbjct: 405 WVLLKNKVTSDTRTHQF 421


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 517 IGRDNDDLVSTVLLHLPQPKSKDVQTLDIGK 609
           +G ++ + V TV   L       VQT+D G+
Sbjct: 313 VGGESVETVLTVTAPLKAKIEPQVQTIDFGR 343


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,028
Number of Sequences: 336
Number of extensions: 3615
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)