Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_N15
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc...    29   0.76 
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    28   1.0  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    25   7.1  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    25   7.1  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    25   9.4  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   9.4  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   9.4  

>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
           Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = +1

Query: 313 EPLKGLYAGVQ----HSPVRVLVNHKAPIYLPLWHSSK 414
           EP + L   +Q    HS +  L +  AP  LP WHSSK
Sbjct: 334 EPFQPLQLDIQAEDIHSVIDALEHMTAPEILPEWHSSK 371


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +2

Query: 563 YLSLRV-KMFKHWILVKNWWSLDL-QKHHFL 649
           Y  LRV +  +HW L +NW S+ L QK +F+
Sbjct: 64  YSKLRVYQTVRHWSLKQNWSSMSLDQKRNFI 94


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1334

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
 Frame = +1

Query: 199  IAVYALATAGLAISIHKIRPVSKFSKASKVPD--HFIR-NHEPL---KGLYAGVQHSPVR 360
            + V A+ ++ L+ +I    PV+ +SK   +P    F+  N +PL   K LY   + + V 
Sbjct: 1100 VLVCAVKSSVLSATIKVFEPVTNYSKTRNMPSLKKFLTVNQDPLRIVKELYIPTESTSVH 1159

Query: 361  VLVN 372
             L N
Sbjct: 1160 FLKN 1163


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 424 PVKLWGIEVVSGNAVNWLECVARGQQVTLKPIG 522
           P K W  E  +G A  W+E + +   ++L P G
Sbjct: 545 PTKSWSFEDPNGPASAWVELLDKASSISL-PFG 576


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 105 FRICRHQNVSKRRRNILQHTIFITTRL 185
           FR+ RH N+S  R  I Q+   + TR+
Sbjct: 426 FRLFRHSNLSTSREQIFQNLEQLGTRV 452


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 130  TF*CLQIRNSHNFLNFRKLAHHYFQSNSEFRRMRE 26
            T+ C+Q      F N+R +AH++ + N E    RE
Sbjct: 990  TYQCIQ--KPLGFRNYRHIAHYFKEKNIEEEMTRE 1022


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 130  TF*CLQIRNSHNFLNFRKLAHHYFQSNSEFRRMRE 26
            T+ C+Q      F N+R +AH++ + N E    RE
Sbjct: 990  TYQCIQ--KPLGFRNYRHIAHYFKEKNIEEEMTRE 1022


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,737,066
Number of Sequences: 5004
Number of extensions: 59719
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)