Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_N15
(649 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0231 - 28547468-28547636,28547767-28547839,28548382-285484... 29 3.2
05_07_0191 - 28303642-28303952,28304044-28304149,28304926-28305654 29 4.2
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 28 5.6
04_04_0096 - 22777684-22777797,22778668-22779047,22779162-227793... 28 5.6
03_05_1156 - 30814037-30814190,30814277-30815166 28 5.6
01_06_1623 - 38716606-38717424 28 5.6
01_06_0849 + 32433429-32433743,32433840-32434021,32434235-324343... 28 5.6
10_01_0212 - 2278447-2279580 27 9.7
09_03_0101 + 12374771-12374926,12375505-12375731,12375816-123759... 27 9.7
02_05_0032 - 25221039-25221138,25221618-25222135 27 9.7
>05_07_0231 -
28547468-28547636,28547767-28547839,28548382-28548463,
28548880-28548970,28549042-28549118,28549493-28549534,
28550101-28550108,28550404-28550534,28551358-28551385,
28551580-28551689,28551843-28551988,28552670-28552711,
28552824-28552832,28552888-28553032,28553596-28553687
Length = 414
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 499 QVTLKPIGRDNDDLVSTVLLHLPQP 573
+V LKP+ + DL++TVLL LP P
Sbjct: 63 RVMLKPLEDPHVDLIATVLLQLPLP 87
>05_07_0191 - 28303642-28303952,28304044-28304149,28304926-28305654
Length = 381
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +1
Query: 385 IYLPLWHSSKPPLPVKLWGIEVVSGNAVNWLECVARGQQVTLKPIG 522
+ LPL KP P +L +E G +NW G T + IG
Sbjct: 234 VALPLSTDHKPDRPDELERVEAAGGRVINWNGYRVLGVLATSRSIG 279
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -2
Query: 516 WL*CHLLAPSNTFQP-IDCIPTNYFNSPQLN 427
WL H AP+N F+P + +PT FN+ + N
Sbjct: 395 WLMDHRKAPNNMFRPLLSSVPTTTFNAGKGN 425
>04_04_0096 -
22777684-22777797,22778668-22779047,22779162-22779373,
22780119-22780561
Length = 382
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = +1
Query: 172 LQQDYRGVNIAVYALATAGLAISIHKIRPVSKFSKASKVPDHFIRNHEPLKGLYAGVQHS 351
L D+RG V +AT+GL + H I V + + V DH + + L +++
Sbjct: 218 LVPDFRGDPACVEKVATSGLHVFAHNIETVEELQR--NVRDHRANFKQSIDVLKLAKEYA 275
Query: 352 PVRVL 366
P L
Sbjct: 276 PAGTL 280
>03_05_1156 - 30814037-30814190,30814277-30815166
Length = 347
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 527 IMMI*FLLYYC-IYLSLRVKMFKHWILVKNWWSLDLQ 634
I+M F +Y IY R KM +W+L + +DL+
Sbjct: 250 IIMAQFFMYLAEIYTERRQKMLANWVLTRKMTKMDLE 286
>01_06_1623 - 38716606-38717424
Length = 272
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 331 YAGVQHSPVRVLVNHKAPIYLP 396
YA SPVR++VN+K+P +P
Sbjct: 196 YAAPDMSPVRIVVNNKSPSEIP 217
>01_06_0849 +
32433429-32433743,32433840-32434021,32434235-32434310,
32434413-32434570,32435567-32435738,32435817-32435927,
32436197-32436280
Length = 365
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 172 LQQDYRGVNIAVYALATAGLAISIHKIRPVSKFSKASKVP 291
L D+RG AV ALA +GL + H I V + + P
Sbjct: 202 LTSDFRGDLEAVSALANSGLDVFAHNIETVRSLQRIVRDP 241
>10_01_0212 - 2278447-2279580
Length = 377
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/19 (63%), Positives = 16/19 (84%), Gaps = 1/19 (5%)
Frame = +1
Query: 526 DNDDLVSTVLLHL-PQPKS 579
D+DDL+S +LLHL P+P S
Sbjct: 20 DDDDLLSEILLHLPPRPSS 38
>09_03_0101 +
12374771-12374926,12375505-12375731,12375816-12375971,
12376066-12376251,12376407-12376591,12376984-12376991
Length = 305
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +2
Query: 512 SQSEEIMMI*FLLYYCIYLSLRVKMFKHWILVKNWW----SLDLQKHHF 646
S E + + FLL+ ++ LR+ +F WIL + +LD +KH F
Sbjct: 208 SSCEGLAVAAFLLFVASWILLRLIIFPFWILRSTSYEVLLTLDKEKHKF 256
>02_05_0032 - 25221039-25221138,25221618-25222135
Length = 205
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 505 TLKPIGRDNDDLVSTVLLHLPQPKSK-DVQTLDIGKKLVELGFAKAS 642
TL +G D+DD T + PQP S+ ++ +D+G G A A+
Sbjct: 19 TLLRLGGDDDDDACTKVTTTPQPVSECELPMIDVGCLTAPTGAAAAA 65
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,869,717
Number of Sequences: 37544
Number of extensions: 354629
Number of successful extensions: 742
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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