Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_N15
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34614| Best HMM Match : FMO-like (HMM E-Value=0)                    31   0.61 
SB_46526| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_47291| Best HMM Match : PilN (HMM E-Value=0.75)                     27   9.9  
SB_42234| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_34614| Best HMM Match : FMO-like (HMM E-Value=0)
          Length = 475

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 162 YVVKYSSFFLRHFDVYRY 109
           YV+KY   F RHFD+Y+Y
Sbjct: 82  YVMKYFHLFARHFDLYKY 99


>SB_46526| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +1

Query: 169 LLQQDYRGVNIAVYALATAGLAISIHKIRPVSKFSKA--SKVPDHFIRNHEPLKGLY 333
           +L+Q Y G  I   AL  A       +IRP  K +K   S   DH   NH P  G Y
Sbjct: 78  VLKQSYAG--IVTLALEAAKTNSDTPQIRPHYKTAKPGLSDSNDHDHNNHAPFSGFY 132


>SB_47291| Best HMM Match : PilN (HMM E-Value=0.75)
          Length = 424

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 277 ASKVPDHFIRNHEPLKGLYAGVQHSPVRV 363
           A+  P   +RN+E L G   G  HSP R+
Sbjct: 348 AANSPYGILRNYETLIGFKQGASHSPFRL 376


>SB_42234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 347

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 514 PIGRDNDDLVSTVLLHLPQPKSKDVQTLD-IGKKLV 618
           P G +ND+ +   L  + QP SKDV ++D +  KL+
Sbjct: 201 PDGLENDNALLDGLEKITQPMSKDVSSMDCVDSKLL 236


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,457,384
Number of Sequences: 59808
Number of extensions: 400970
Number of successful extensions: 914
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)