Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_N15
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   4.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   4.4  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    22   5.9  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   5.9  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +1

Query: 199 IAVYALATAGLAISIHKIRPVSK 267
           I ++  +  G ++S+H I PV++
Sbjct: 247 ITIFGESAGGSSVSLHLISPVTR 269


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +1

Query: 199 IAVYALATAGLAISIHKIRPVSK 267
           I ++  +  G ++S+H I PV++
Sbjct: 247 ITIFGESAGGSSVSLHLISPVTR 269


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +1

Query: 94  NYENFVSVDIKMSQKEGGIFYNIQYLLQ 177
           NY N+ + +   +     ++YNI Y+ Q
Sbjct: 90  NYSNYNNYNNNYNNYNKKLYYNINYIEQ 117


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +1

Query: 94  NYENFVSVDIKMSQKEGGIFYNIQYLLQ 177
           NY N+ + +   +     ++YNI Y+ Q
Sbjct: 333 NYNNYNNYNNNYNNNYKKLYYNINYIEQ 360


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,568
Number of Sequences: 438
Number of extensions: 4143
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)