Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_N15
         (649 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6 ...    28   4.7  
At4g08370.1 68417.m01382 proline-rich extensin-like family prote...    28   4.7  
At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative...    28   6.1  

>At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6
           WD-40 repeats (PF00400); similar to Fzr1
           (GI:6463679){Homo sapiens}
          Length = 481

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = -3

Query: 542 TRSSLSLPIGFNVTCWPLATHSSQLTAFPLTTSIPHSLTGSGGLLECHSGKYIGA 378
           T++ L+LP G N T   L T SS       + S P   T S   + C S   + A
Sbjct: 7   TKTGLNLPAGMNQTSLRLETFSSSFRGIS-SLSSPSKSTCSDRFIPCRSSSRLHA 60


>At4g08370.1 68417.m01382 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 350

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +1

Query: 241 IHKIRPVSKFSKASKVPDHFIRNHEPLKGLYAGVQHSPVRVLVNHKAPIYLPLWHSSKPP 420
           ++K  P S +  +S  P  ++ N  P    Y  + +SP R    +K+P   P  +SS PP
Sbjct: 51  VYKSPPPSPYLYSSPPPPPYVYNSPPPPPPY--IYNSPPRPPYVYKSPPPPPFVYSSPPP 108


>At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative
           (UBP5) similar to GI:6648604
          Length = 924

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +1

Query: 481 CVARGQQVTLKPIGRDNDDLVSTVLLHLPQPKSKDVQTLDIGKKLVEL 624
           C + G     KP   DN DL+    L  P   S+ ++TL  G+  V L
Sbjct: 74  CDSPGSSTLKKPSRIDNSDLIYDSSLEDPSNTSEIIETLQEGRDYVLL 121


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,913,406
Number of Sequences: 28952
Number of extensions: 297457
Number of successful extensions: 679
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)