Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_N14
         (508 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    27   0.13 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   4.8  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   4.8  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   6.3  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   8.4  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   8.4  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   8.4  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    21   8.4  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 26.6 bits (56), Expect = 0.13
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 176 CVMLHSSSPPPFRHSAQP 123
           C  L SS PPP++ SAQP
Sbjct: 323 CWSLTSSPPPPYQISAQP 340


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +1

Query: 340 PQPG*EGAP*HLL*HPRCPRQVPHPQLTD 426
           P PG    P HL  HP      P  +L D
Sbjct: 232 PHPGLSPHPPHLSSHPAIVTPGPKQELPD 260


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +1

Query: 340 PQPG*EGAP*HLL*HPRCPRQVPHPQLTD 426
           P PG    P HL  HP      P  +L D
Sbjct: 124 PHPGLSPHPPHLSSHPAIVTPGPKQELPD 152


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 140 RHSAQPAQLTLLYTHYLPF 84
           R +  P  L ++ TH +PF
Sbjct: 444 RENIDPIPLVVVLTHLIPF 462


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -3

Query: 167 LHSSSPPPFRHSAQP 123
           LHS   PP  H  +P
Sbjct: 89  LHSHHGPPIHHQIRP 103


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -3

Query: 167 LHSSSPPPFRHSAQP 123
           LHS   PP  H  +P
Sbjct: 89  LHSHHGPPIHHQIRP 103


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -3

Query: 167 LHSSSPPPFRHSAQP 123
           LHS   PP  H  +P
Sbjct: 89  LHSHHGPPIHHQIRP 103


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -3

Query: 167 LHSSSPPPFRHSAQP 123
           LHS   PP  H  +P
Sbjct: 89  LHSHHGPPIHHQIRP 103


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,870
Number of Sequences: 336
Number of extensions: 2085
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12049355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)