Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_N14
         (508 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   7.3  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   9.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.7  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        21   9.7  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 245 GARRASWRIISSIEQKEETKGAED 316
           G  R S   ++S+  +EET+ AED
Sbjct: 37  GKSRQSSFEVTSLLMREETEDAED 60


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 161 NVASRNVSDNELTVEERNLLSVAYKNV 241
           NVAS   S+N+ T  E  L  VA   +
Sbjct: 258 NVASLRSSENQNTSAECKLAKVALMTI 284


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +2

Query: 230 YKNVIGARRASWRIISSIEQKEETKGAEDKLNMIRAYRSQVEKE 361
           Y+ V  A     + I + E   +TK     LN +  YR QV  E
Sbjct: 352 YRVVCDACSMGVKYIPNTEVFNDTKITITGLNAVTTYRFQVFAE 395


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 161 NVASRNVSDNELTVEERNLLSVAYKNV 241
           NVAS   S+N+ T  E  L  VA   +
Sbjct: 8   NVASLRSSENQNTSAECKLAKVALMTI 34


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,587
Number of Sequences: 438
Number of extensions: 2695
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)