Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_N13
(634 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42048| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 2e-08
SB_20620| Best HMM Match : zf-HIT (HMM E-Value=8.5e-10) 44 8e-05
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_15242| Best HMM Match : E2F_TDP (HMM E-Value=6e-14) 32 0.34
SB_25383| Best HMM Match : Cyclin_N (HMM E-Value=0) 31 0.78
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_39986| Best HMM Match : CNH (HMM E-Value=6.99949e-42) 31 1.0
SB_34917| Best HMM Match : zf-C2H2 (HMM E-Value=3.9e-37) 31 1.0
SB_5544| Best HMM Match : APG9 (HMM E-Value=7e-09) 30 1.8
SB_44839| Best HMM Match : RVT_1 (HMM E-Value=0.071) 29 4.1
SB_3017| Best HMM Match : RVT_1 (HMM E-Value=1.1e-19) 29 4.1
SB_58325| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_8648| Best HMM Match : C2 (HMM E-Value=0.98) 28 5.5
SB_43285| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_48817| Best HMM Match : DUF1154 (HMM E-Value=6.3) 27 9.6
SB_24605| Best HMM Match : HNOB (HMM E-Value=0) 27 9.6
>SB_42048| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 104
Score = 56.0 bits (129), Expect = 2e-08
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Frame = +1
Query: 340 QAVENLYPTEDTVPLDRLNL--LENSTEVKKCLENPHVREILELLDSSANPDELVQEYMQ 513
+ +++ TED L+ +L L NS ++ L NPH+R+++ +D NP ++ M+
Sbjct: 13 EVYDDVQVTEDEDRLNEHDLAKLANSKAIRDLLCNPHLRKMITEIDCHPNPGVILGNAMR 72
Query: 514 EPIFTEFVDACLKVVQ 561
EP+F EF D CL VVQ
Sbjct: 73 EPVFAEFADQCLAVVQ 88
>SB_20620| Best HMM Match : zf-HIT (HMM E-Value=8.5e-10)
Length = 567
Score = 44.4 bits (100), Expect = 8e-05
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Frame = +1
Query: 181 THSEMNCGTCRSD-PKYKCPTCMVPYCSVACYKLHKQNPCIKPPSPPKQTIGVKQAVENL 357
++S C C+ KY CP C V YCS++CY+ K C + +Q + +++
Sbjct: 19 SNSADTCFFCKKQFSKYTCPRCNVRYCSISCYRCEKHVECTE--DFYRQNVMDALKLDSN 76
Query: 358 YPTEDTVPLDRLNLLENSTEVKKCLENPHVREILELLDSSANPDEL 495
P + ++ L LE+ + + E + E L +D +PD L
Sbjct: 77 CPDDPDRIIEMLKRLEDDGKGEGDEEGSGLEERLRDIDLDRDPDVL 122
>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 32.7 bits (71), Expect = 0.25
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 187 SEMNCGTCRSDPKYKCPTCMVPYCSVACYKLH 282
++M C C KC C +PYCS C + H
Sbjct: 137 NKMPCTNCGKLGGKKCTACKIPYCSRKCQQQH 168
>SB_15242| Best HMM Match : E2F_TDP (HMM E-Value=6e-14)
Length = 273
Score = 32.3 bits (70), Expect = 0.34
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = +1
Query: 316 PKQTIGVKQAVENLYPTEDTVPLDRLNLLENSTEVKKCLE 435
PK+TI V++AVE L+ + V D +N+LE + VK+ L+
Sbjct: 98 PKRTISVEKAVERLHANKRRV-YDIVNILEGAGVVKRTLD 136
>SB_25383| Best HMM Match : Cyclin_N (HMM E-Value=0)
Length = 561
Score = 31.1 bits (67), Expect = 0.78
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 199 CGTCRSDPKYKCPTCMVPYCS 261
C +C D KY+C C +P+C+
Sbjct: 382 CSSCFGDTKYQCILCEMPFCN 402
>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1870
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 202 GTCRSDPKYKCPTCMVPYCSVACYKLHKQNPCIKPPSPPK 321
G CR +P+Y P C C + P +PP+PP+
Sbjct: 1329 GECRRNPRYMRPNCR-KSCGLCTTSPIPSTPRPRPPTPPR 1367
>SB_39986| Best HMM Match : CNH (HMM E-Value=6.99949e-42)
Length = 952
Score = 30.7 bits (66), Expect = 1.0
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 11/94 (11%)
Frame = +1
Query: 265 ACYKLHKQNPCIKPPSPPKQTIGVKQA-----------VENLYPTEDTVPLDRLNLLENS 411
AC K K N KPP PP + K+ V N++P + V LD ++ S
Sbjct: 304 ACGKKRKANNANKPPLPPDSSHRPKERMHHNIPHRFVNVLNMHPVKCAVCLDSVHFGRQS 363
Query: 412 TEVKKCLENPHVREILELLDSSANPDELVQEYMQ 513
++ +C H++ L + P + V+ + +
Sbjct: 364 SKCAECDSVCHIKCCPNLPHTCGLPSQFVEHFSE 397
>SB_34917| Best HMM Match : zf-C2H2 (HMM E-Value=3.9e-37)
Length = 288
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = +1
Query: 178 PTHSEMNCGTCRSDPKYKCPTCMVPYCSVACYKLHKQNPCIKPPSPPKQTIGVKQAVENL 357
P+H T + K +CP CM + ++A H+ C PP+ K+ K E L
Sbjct: 122 PSHDPSRVVTSEAPAKLQCPNCMKGFNALATLMRHQYFYC--PPTQHKRPFHCKYC-EKL 178
Query: 358 Y 360
Y
Sbjct: 179 Y 179
>SB_5544| Best HMM Match : APG9 (HMM E-Value=7e-09)
Length = 1288
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/85 (24%), Positives = 36/85 (42%)
Frame = +1
Query: 370 DTVPLDRLNLLENSTEVKKCLENPHVREILELLDSSANPDELVQEYMQEPIFTEFVDACL 549
D P DR++ V+ +ENP + E+ + N D + E IFT+ D
Sbjct: 845 DVTPGDRISTATYVVSVRAIIENPDLEEVKLVHIGIKNADLSMIEGFPAEIFTD--DFTD 902
Query: 550 KVVQPQ*YHETKYSVYENLLCEKIK 624
+ Y E S+Y ++C ++
Sbjct: 903 PAQNEEIYIEYLPSLYRRIVCRVVR 927
>SB_44839| Best HMM Match : RVT_1 (HMM E-Value=0.071)
Length = 351
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 564 RLNNFQTCINKFCEYGFLHIF 502
R N F +N FC YG +HI+
Sbjct: 323 RKNGFADIVNMFCNYGKVHIY 343
>SB_3017| Best HMM Match : RVT_1 (HMM E-Value=1.1e-19)
Length = 522
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 203 ELVDQILNISVPRAWYLTVQSPVINYTNKILVSNHRP 313
ELV L+ ++P W +PV NK + SN+RP
Sbjct: 288 ELVSDSLDGTLPNDWLSENVTPVFKKGNKNIPSNYRP 324
>SB_58325| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 80
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 288 KSLYQTTVPAETNNRRKASC*KFIPYRRYG 377
K ++ TT E + +C FIP++RYG
Sbjct: 50 KRVWSTTCHREDMTEKPKACAMFIPFKRYG 79
>SB_8648| Best HMM Match : C2 (HMM E-Value=0.98)
Length = 273
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 406 NSTEVKKCLENPHVREILELLDSSANP-DELVQEYMQEPIFTEFVDAC 546
NST +K +NP+ + L D NP +E +QEY + E VD C
Sbjct: 216 NSTIIKNTQKNPNFDQPLFFFDVGDNPEEEPIQEYHDD----EQVDEC 259
>SB_43285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 273
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +1
Query: 223 KYKCPTCMVPYCSVACYKLHKQNPC-IKPPSPPKQTIGVKQAVENLYPTEDTVPLDR 390
K+KC C + + S A Y HK C IK P ++ +Q ++ L + ++ L+R
Sbjct: 3 KWKCEACNMKFESQALYHTHKMKFCVIKLPRSRDRSNPARQ-IQELKALKASMSLER 58
>SB_48817| Best HMM Match : DUF1154 (HMM E-Value=6.3)
Length = 292
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 427 CLENPHVREILELLDSSANPDELVQEYMQEPIFTEFVDACLKVVQ 561
C E + + E + + +P VQE ++EP E C KV++
Sbjct: 26 CFEGEYHITLDETVPPAIHPPRRVQEALREPFKAELDSLCEKVIK 70
>SB_24605| Best HMM Match : HNOB (HMM E-Value=0)
Length = 676
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 271 YKLHKQNPCIKPPSPPKQTIGVKQAV 348
Y+L N KPP P T+G K+AV
Sbjct: 187 YRLEFNNEGYKPPPPDFLTVGTKKAV 212
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,589,866
Number of Sequences: 59808
Number of extensions: 383568
Number of successful extensions: 1163
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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