Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_N13
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    25   0.81 
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   7.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.5  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   9.9  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   9.9  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   9.9  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
 Frame = +1

Query: 154 TNFPI-KFQPTHSEMNCGTCRSDPK---YKCPTCMVPYCSVACYKLHKQNPCIKPPSPPK 321
           T  PI KF+      +C  C +  K   Y    C          K  K+ PC +PPS P+
Sbjct: 263 TECPIGKFKHEAGSHSCEACPAHSKSSDYGFTECRCDPGYFRAEKDPKKMPCTQPPSAPQ 322


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 374 VSSVGYKFSTACFTPIVCFGGDGGL 300
           +  +GY  ++  F PI  + GD  L
Sbjct: 178 IKKIGYNTASVAFVPISGWHGDNML 202


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 469  DSSANPDELVQEYMQE 516
            +SS NPD+   EY+ E
Sbjct: 968  ESSCNPDQKPTEYLLE 983


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -3

Query: 425 FLTSVEFSNKLSLSNGTVSSVGYKFSTACFTPIVC 321
           F   V+ S   SL    V SV Y      F+P +C
Sbjct: 134 FFIYVQPSATFSLDLNKVVSVFYTAVIPMFSPFIC 168


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +1

Query: 46  HKIYRITEINM*HLKNRLKIYYENNYK 126
           HKI      N  +  N  K  Y NNYK
Sbjct: 79  HKIISSLSNNYNYNNNNYKKLYCNNYK 105


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +1

Query: 46  HKIYRITEINM*HLKNRLKIYYENNYK 126
           HKI      N  +  N  K  Y NNYK
Sbjct: 79  HKIISSLSNNYNYNNNNYKKLYCNNYK 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,856
Number of Sequences: 438
Number of extensions: 4355
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)