Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_N13
(634 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g28820.1 68417.m04120 zinc finger (HIT type) family protein c... 62 3e-10
At5g37055.1 68418.m04446 zinc finger (HIT type) family protein c... 34 0.068
At4g16340.1 68417.m02476 adapter protein SPIKE1 (SPK1) One model... 31 0.48
At4g27880.1 68417.m04002 seven in absentia (SINA) family protein... 30 1.1
At5g37930.1 68418.m04569 seven in absentia (SINA) family protein... 29 1.9
At2g47350.1 68415.m05911 PAPA-1-like family protein / zinc finge... 29 1.9
At5g37870.1 68418.m04561 seven in absentia (SINA) family protein... 29 2.6
At3g61790.1 68416.m06933 seven in absentia (SINA) family protein... 29 2.6
At2g18190.1 68415.m02116 AAA-type ATPase family protein contains... 29 3.4
At1g05490.1 68414.m00559 C protein immunoglobulin-A-binding beta... 29 3.4
At5g37910.1 68418.m04567 seven in absentia (SINA) family protein... 28 4.5
At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein ... 28 5.9
At1g56460.1 68414.m06493 PAPA-1-like family protein / zinc finge... 28 5.9
At1g26665.2 68414.m03248 expressed protein 28 5.9
At1g26665.1 68414.m03247 expressed protein 28 5.9
At5g41910.1 68418.m05102 RNA polymerase II mediator complex prot... 27 7.8
At5g37890.1 68418.m04565 seven in absentia (SINA) protein, putat... 27 7.8
At3g60920.1 68416.m06815 beige/BEACH domain-containing protein c... 27 7.8
At3g28380.1 68416.m03546 P-glycoprotein, putative similar to P-g... 27 7.8
At2g41980.1 68415.m05193 seven in absentia (SINA) family protein... 27 7.8
At1g66620.1 68414.m07570 seven in absentia (SINA) protein, putat... 27 7.8
>At4g28820.1 68417.m04120 zinc finger (HIT type) family protein
contains Pfam profile: PF04438 HIT zinc finger
Length = 173
Score = 62.1 bits (144), Expect = 3e-10
Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 37/146 (25%)
Frame = +1
Query: 223 KYKCPTCMVPYCSVACYKLHKQNPCIK----------PPSPPKQTIGVKQAVENLYPTED 372
KYKCP+C+VPYCS+ C+K+HK+ PC K P + P + + VK+ E E
Sbjct: 18 KYKCPSCLVPYCSLGCFKIHKETPCAKPSDPSSTEEKPAASPAKEVPVKRPEEANDVVEK 77
Query: 373 T------------VPLDRLNLLE---------------NSTEVKKCLENPHVREILELLD 471
T +P+ R ++E +S+E+++ L++ +++++ +D
Sbjct: 78 TQQKASAASPAKEIPVARPIIVEEEKYILEKTQFEAIASSSEIREALKDEPLQKLIYSID 137
Query: 472 SSANPDELVQEYMQEPIFTEFVDACL 549
SS+NP + + E M F EF D L
Sbjct: 138 SSSNPLQELDEAMGIEAFREFTDKIL 163
>At5g37055.1 68418.m04446 zinc finger (HIT type) family protein
contains Pfam profile: PF04438 HIT zinc finger
Length = 171
Score = 34.3 bits (75), Expect = 0.068
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +1
Query: 199 CGTCRSDPKYKCPTCMVPYCSVACYKLHKQNPCIK 303
C C Y C C + +CS+ C +HK C K
Sbjct: 134 CSVCGYIAGYNCCLCGMRFCSIRCQNIHKDTRCQK 168
>At4g16340.1 68417.m02476 adapter protein SPIKE1 (SPK1) One model
reflects the alignment of a full-length cDNA sequence
gi:18496702. There are multiple frame shifts in the
gene model resulting in a truncated protein. The
alternate model includes modifications in exons 14, 17
and 29 to compensate for frame shifts and maximize the
protein length. It is not based on EST data. adapter
protein SPIKE1 [Arabidopsis thaliana] GI:18496703
Length = 1757
Score = 31.5 bits (68), Expect = 0.48
Identities = 21/64 (32%), Positives = 29/64 (45%)
Frame = +1
Query: 199 CGTCRSDPKYKCPTCMVPYCSVACYKLHKQNPCIKPPSPPKQTIGVKQAVENLYPTEDTV 378
C T R++P C+ Y VA K+NP I+ T KQ +E +YP E V
Sbjct: 451 CSTTRNEPFLHLFHCLYVY-PVAVTLSRKRNPFIRVELRKDDTDIRKQPLEAIYPREPGV 509
Query: 379 PLDR 390
L +
Sbjct: 510 SLQK 513
>At4g27880.1 68417.m04002 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia protein
family
Length = 327
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/53 (26%), Positives = 22/53 (41%)
Frame = +1
Query: 151 YTNFPIKFQPTHSEMNCGTCRSDPKYKCPTCMVPYCSVACYKLHKQNPCIKPP 309
Y+ +P Q + C TC+ +CPTC + C L K ++ P
Sbjct: 69 YSMYPPIHQCHNGHTLCSTCKVRVHNRCPTCRQELGDIRCLALEKVAESLELP 121
>At5g37930.1 68418.m04569 seven in absentia (SINA) family protein
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 349
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +1
Query: 172 FQPTHSEMNCGTCRSDPKYKCPTCMVPYCSVACYKLHK 285
FQ + + C C + + +CP+C +P V C + K
Sbjct: 125 FQCDNGHLACTLCCTKVRNRCPSCTLPIGYVRCRAMEK 162
>At2g47350.1 68415.m05911 PAPA-1-like family protein / zinc finger
(HIT type) family protein contains Pfam domains,
PF04795: PAPA-1-like conserved region and PF04438: HIT
zinc finger
Length = 486
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +1
Query: 163 PIKFQPTHSEMNCGTCRSDPKYKCPTCMVPYCSVACYKLHKQNPCIKPP 309
P + P +C + KY+ VP CS+ CYK Q I PP
Sbjct: 439 PSGYPPPRENCVGPSCTNPYKYRDSKTKVPLCSLKCYKA-VQGQQIAPP 486
>At5g37870.1 68418.m04561 seven in absentia (SINA) family protein
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 281
Score = 29.1 bits (62), Expect = 2.6
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = +1
Query: 172 FQPTHSEMNCGTCRSDPKYKCPTCMVPYCSVACYKLHK 285
FQ + + C +C + KCP C +P + C + +
Sbjct: 57 FQCGNGHLACSSCCPKLRNKCPACALPVGHIRCRAMER 94
>At3g61790.1 68416.m06933 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia protein
family
Length = 326
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +1
Query: 199 CGTCRSDPKYKCPTCMVPYCSVACYKLHKQNPCIKPP 309
C TC++ +CPTC + C L K ++ P
Sbjct: 84 CSTCKARVHNRCPTCRQELGDIRCLALEKVAESLELP 120
>At2g18190.1 68415.m02116 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 494
Score = 28.7 bits (61), Expect = 3.4
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +1
Query: 430 LENPHVREILELLDSS-ANPDELVQEYMQEPIFTEFVDACLKVVQPQ*YHETKYSVYENL 606
L +P EI L+DS+ P EL +E MQE + + V+ + +K E
Sbjct: 399 LNHPLCEEIEALIDSTEVTPAELAEELMQEDDTDVVLRGVVSFVENRKVEISKTKELEGS 458
Query: 607 LCEKIKVDN 633
C K+ D+
Sbjct: 459 TCRKLDGDD 467
>At1g05490.1 68414.m00559 C protein immunoglobulin-A-binding beta
antigen-related contains weak similarity to C protein
immunoglobulin-A-binding beta antigen [Streptococcus
agalactiae] gi|18028989|gb|AAL56250
Length = 731
Score = 28.7 bits (61), Expect = 3.4
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +1
Query: 283 KQNPCIKPPSPPKQTIGV-KQAVENLYPTEDTVPLDRLNLLENSTEVKK-CLENPHVREI 456
+QNPC+K S +GV K+ + + +P+ R + L++ +E K CL EI
Sbjct: 106 EQNPCLKERSFRVSDLGVEKKCSPEITDLDVGIPVPRFSKLKDVSEQKNTCLMQKSSPEI 165
Query: 457 LEL 465
+L
Sbjct: 166 ADL 168
>At5g37910.1 68418.m04567 seven in absentia (SINA) family protein
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 276
Score = 28.3 bits (60), Expect = 4.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 172 FQPTHSEMNCGTCRSDPKYKCPTCMVP 252
FQ + + CG+C KCP C +P
Sbjct: 50 FQCDNGHLACGSCCPKLSNKCPACTLP 76
>At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 1230
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +1
Query: 199 CGTCRSDPKYKCPTCMVPYCSVACYK 276
CGTC+ Y C TC C C K
Sbjct: 97 CGTCQKASSYMCYTCTFSVCK-RCIK 121
>At1g56460.1 68414.m06493 PAPA-1-like family protein / zinc finger
(HIT type) family protein contains Pfam profile PF04795:
PAPA-1-like conserved region
Length = 502
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = +1
Query: 145 SKYTNFPIKFQPTHSEMNCGTCRSDPKYKCPTCMVPYCSVACYKLHK 285
S + + P + P C + KY+ +P CS+ CYK K
Sbjct: 455 SIFNSTPHSYPPPRERCAGPECTNPYKYRDSESNLPLCSLRCYKAIK 501
>At1g26665.2 68414.m03248 expressed protein
Length = 189
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Frame = +1
Query: 346 VENLYPTEDTVPLDRLNLL----ENSTEVKKCLENPHVREILELLDSSANPDELVQEYMQ 513
V + P L RLN L +N T++ + E+L L+D NPDE ++ +
Sbjct: 60 VTSFTPASQLHLLQRLNSLVMELDNMTKLSEKCNIQIPMEVLNLIDDGKNPDEFTKDVLN 119
Query: 514 EPI 522
I
Sbjct: 120 SCI 122
>At1g26665.1 68414.m03247 expressed protein
Length = 189
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Frame = +1
Query: 346 VENLYPTEDTVPLDRLNLL----ENSTEVKKCLENPHVREILELLDSSANPDELVQEYMQ 513
V + P L RLN L +N T++ + E+L L+D NPDE ++ +
Sbjct: 60 VTSFTPASQLHLLQRLNSLVMELDNMTKLSEKCNIQIPMEVLNLIDDGKNPDEFTKDVLN 119
Query: 514 EPI 522
I
Sbjct: 120 SCI 122
>At5g41910.1 68418.m05102 RNA polymerase II mediator complex
protein-related similar to SP|P87310 RNA polymerase II
mediator complex protein nut2 {Schizosaccharomyces
pombe}
Length = 186
Score = 27.5 bits (58), Expect = 7.8
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = +1
Query: 334 VKQAVENLYPTEDTVPLDRLN-LLENSTEVKKCLENPHVR---EILELLDSSANPDELVQ 501
+K V + P L RLN L+ + K + +++ E+L L+D NPDE +
Sbjct: 52 LKLTVSSFTPASQLHLLQRLNSLVMELDNMAKLSDKCNIQVPIEVLNLIDDGKNPDEFTK 111
Query: 502 EYMQE 516
+ + +
Sbjct: 112 DVLNK 116
>At5g37890.1 68418.m04565 seven in absentia (SINA) protein, putative
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 286
Score = 27.5 bits (58), Expect = 7.8
Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Frame = +1
Query: 151 YTNFPIK-FQPTHSEMNCGTCRSDPKYKCPTCMVPYCSVACYKLHKQNPCIKPPSPPKQT 327
Y F I FQ + + C +C KCP C P C + I P P
Sbjct: 55 YEAFTIPIFQCDNGHLACSSCCPKLNNKCPACTSPVGHNRCRAMESVLESILIPC-PNAK 113
Query: 328 IGVKQAV 348
+G K+ V
Sbjct: 114 LGCKKNV 120
>At3g60920.1 68416.m06815 beige/BEACH domain-containing protein
contains Pfam PF02138: Beige/BEACH domain; similar to LBA
isoform gamma (GI:10257405) [Mus musculus]; similar to
beige-like protein (CDC4L) - Homo sapiens; similar to
Neurobeachin: kinase A-anchoring, beige/Chediak-higashi
protein homolog implicated in neuronal membrane traffic
(AKAP550) (GI:11863541) [Drosophila melanogaster].
Length = 1928
Score = 27.5 bits (58), Expect = 7.8
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 370 DTVPLDRLNLLENSTEVKKCLENPHVREILELLDSSANPDELVQEYMQ 513
D PL N+++NSTEVK L R +LE+ + P +V+ Q
Sbjct: 1510 DHRPLSEQNMVQNSTEVKD-LSELKERIVLEISSTMVRPLGVVKGTFQ 1556
>At3g28380.1 68416.m03546 P-glycoprotein, putative similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1240
Score = 27.5 bits (58), Expect = 7.8
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +1
Query: 328 IGVKQAVENL-YPTEDTVPLDRLNLLENSTEVKKCLENPHVREILELLDSSANPDELVQE 504
+ + Q++ NL Y +E V +R+ LE V N +ILE + + +
Sbjct: 310 VSLGQSLSNLKYFSEAFVAWERI--LEVIKRVPDIDSNKKEGQILERMKGEVEFNHVKFT 367
Query: 505 YMQEPIFTEFVDACLKV 555
Y+ P T F D CLK+
Sbjct: 368 YLSRPETTIFDDLCLKI 384
>At2g41980.1 68415.m05193 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia protein
family
Length = 305
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/50 (24%), Positives = 21/50 (42%)
Frame = +1
Query: 160 FPIKFQPTHSEMNCGTCRSDPKYKCPTCMVPYCSVACYKLHKQNPCIKPP 309
+P Q + C +C+ + CPTC ++ C L K ++ P
Sbjct: 65 YPPIHQCPNGHTLCSSCKLRVQNTCPTCRYELGNIRCLALEKVAESLEVP 114
>At1g66620.1 68414.m07570 seven in absentia (SINA) protein, putative
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 313
Score = 27.5 bits (58), Expect = 7.8
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1
Query: 172 FQPTHSEMNCGTCRSDPKYKCPTCMVP 252
FQ + + C +C + + KCP+C +P
Sbjct: 56 FQCDNGHIACSSCCTKLRNKCPSCALP 82
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,980,819
Number of Sequences: 28952
Number of extensions: 268714
Number of successful extensions: 763
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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