BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fprWP01_F_N09 (656 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BC111517-1|AAI11518.1| 213|Homo sapiens NDUFS7 protein protein. 191 2e-48 BC005954-1|AAH05954.1| 213|Homo sapiens NADH dehydrogenase (ubi... 191 2e-48 BC001715-1|AAH01715.2| 208|Homo sapiens NDUFS7 protein protein. 190 3e-48 AK222738-1|BAD96458.1| 213|Homo sapiens NADH-ubiquinone oxidore... 190 3e-48 AK092169-1|BAC03820.1| 213|Homo sapiens protein ( Homo sapiens ... 190 3e-48 AF115969-1|AAP97240.1| 213|Homo sapiens NADH:ubiquinone oxidore... 190 3e-48 AC005329-1|AAC27669.1| 158|Homo sapiens NUKM_HUMAN, partial CDS... 190 3e-48 AK128713-1|BAC87587.1| 155|Homo sapiens C 1.6.5.3). protein. 153 5e-37 AF060512-1|AAG43130.1| 214|Homo sapiens My017 protein protein. 152 1e-36 Y07707-1|CAA68976.1| 238|Homo sapiens ITBA4 protein. 30 8.3 EF216689-1|ABN11235.1| 690|Homo sapiens NF-kappaB repressing fa... 30 8.3 EF216688-1|ABN11234.1| 690|Homo sapiens NF-kappaB repressing fa... 30 8.3 EF165092-1|ABM55377.1| 599|Homo sapiens NF-kappaB repressing fa... 30 8.3 BC068514-1|AAH68514.1| 690|Homo sapiens NF-kappaB repressing fa... 30 8.3 BC047878-1|AAH47878.1| 690|Homo sapiens NF-kappaB repressing fa... 30 8.3 BC040379-1|AAH40379.1| 690|Homo sapiens NF-kappaB repressing fa... 30 8.3 AY208891-1|AAP43025.1| 690|Homo sapiens transcription factor NR... 30 8.3 AK127759-1|BAC87117.1| 294|Homo sapiens r (EC 1.6.5.3). protein. 30 8.3 >BC111517-1|AAI11518.1| 213|Homo sapiens NDUFS7 protein protein. Length = 213 Score = 191 bits (465), Expect = 2e-48 Identities = 95/155 (61%), Positives = 114/155 (73%) Frame = +2 Query: 191 MQAIKALGATSPNTVLSFMKKGVFTPVVSQIRDTHLPAPNPTEKRPYSPFQDASNMAEMA 370 ++ + LG S + L+ +GV V + + PA + R +P S+ E Sbjct: 9 LRGFRILGLRS-SVGLAVQARGVHQSVATDGPSSTQPAL--PKARAVAP--KPSSRGEYV 63 Query: 371 VARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVA 550 VA+LDDL+NW R+ SLWPMTFGLACCAVEMMH+AAPRYDMDR+GVVFRASPRQSDVMIVA Sbjct: 64 VAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVA 123 Query: 551 GTLTNKMAPALRKVYDXMPDPXWVISMGXCANGGG 655 GTLTNKMAPALRKVYD MP+P +V+SMG CANGGG Sbjct: 124 GTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGG 158 >BC005954-1|AAH05954.1| 213|Homo sapiens NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductas protein. Length = 213 Score = 191 bits (465), Expect = 2e-48 Identities = 95/155 (61%), Positives = 114/155 (73%) Frame = +2 Query: 191 MQAIKALGATSPNTVLSFMKKGVFTPVVSQIRDTHLPAPNPTEKRPYSPFQDASNMAEMA 370 ++ + LG S + L+ +GV V + + PA + R +P S+ E Sbjct: 9 LRGFRILGLRS-SVGLAVQARGVHQSVATDGPSSTQPAL--PKARAVAP--KPSSRGEYV 63 Query: 371 VARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVA 550 VA+LDDL+NW R+ SLWPMTFGLACCAVEMMH+AAPRYDMDR+GVVFRASPRQSDVMIVA Sbjct: 64 VAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVA 123 Query: 551 GTLTNKMAPALRKVYDXMPDPXWVISMGXCANGGG 655 GTLTNKMAPALRKVYD MP+P +V+SMG CANGGG Sbjct: 124 GTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGG 158 >BC001715-1|AAH01715.2| 208|Homo sapiens NDUFS7 protein protein. Length = 208 Score = 190 bits (464), Expect = 3e-48 Identities = 84/102 (82%), Positives = 93/102 (91%) Frame = +2 Query: 350 SNMAEMAVARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQ 529 S+ E VA+LDDL+NW R+ SLWPMTFGLACCAVEMMH+AAPRYDMDR+GVVFRASPRQ Sbjct: 52 SSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQ 111 Query: 530 SDVMIVAGTLTNKMAPALRKVYDXMPDPXWVISMGXCANGGG 655 SDVMIVAGTLTNKMAPALRKVYD MP+P +V+SMG CANGGG Sbjct: 112 SDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGG 153 >AK222738-1|BAD96458.1| 213|Homo sapiens NADH-ubiquinone oxidoreductase Fe-S protein 7 variant protein. Length = 213 Score = 190 bits (464), Expect = 3e-48 Identities = 84/102 (82%), Positives = 93/102 (91%) Frame = +2 Query: 350 SNMAEMAVARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQ 529 S+ E VA+LDDL+NW R+ SLWPMTFGLACCAVEMMH+AAPRYDMDR+GVVFRASPRQ Sbjct: 57 SSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQ 116 Query: 530 SDVMIVAGTLTNKMAPALRKVYDXMPDPXWVISMGXCANGGG 655 SDVMIVAGTLTNKMAPALRKVYD MP+P +V+SMG CANGGG Sbjct: 117 SDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGG 158 >AK092169-1|BAC03820.1| 213|Homo sapiens protein ( Homo sapiens cDNA FLJ34850 fis, clone NT2NE2011758, highly similar to NADH-UBIQUINONE OXIDOREDUCTASE 20 KDA SUBUNIT PRECURSOR (EC ). Length = 213 Score = 190 bits (464), Expect = 3e-48 Identities = 84/102 (82%), Positives = 93/102 (91%) Frame = +2 Query: 350 SNMAEMAVARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQ 529 S+ E VA+LDDL+NW R+ SLWPMTFGLACCAVEMMH+AAPRYDMDR+GVVFRASPRQ Sbjct: 64 SSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQ 123 Query: 530 SDVMIVAGTLTNKMAPALRKVYDXMPDPXWVISMGXCANGGG 655 SDVMIVAGTLTNKMAPALRKVYD MP+P +V+SMG CANGGG Sbjct: 124 SDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGG 165 >AF115969-1|AAP97240.1| 213|Homo sapiens NADH:ubiquinone oxidoreductase PSST subunit protein. Length = 213 Score = 190 bits (464), Expect = 3e-48 Identities = 84/102 (82%), Positives = 93/102 (91%) Frame = +2 Query: 350 SNMAEMAVARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQ 529 S+ E VA+LDDL+NW R+ SLWPMTFGLACCAVEMMH+AAPRYDMDR+GVVFRASPRQ Sbjct: 57 SSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQ 116 Query: 530 SDVMIVAGTLTNKMAPALRKVYDXMPDPXWVISMGXCANGGG 655 SDVMIVAGTLTNKMAPALRKVYD MP+P +V+SMG CANGGG Sbjct: 117 SDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGG 158 >AC005329-1|AAC27669.1| 158|Homo sapiens NUKM_HUMAN, partial CDS protein. Length = 158 Score = 190 bits (464), Expect = 3e-48 Identities = 84/102 (82%), Positives = 93/102 (91%) Frame = +2 Query: 350 SNMAEMAVARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQ 529 S+ E VA+LDDL+NW R+ SLWPMTFGLACCAVEMMH+AAPRYDMDR+GVVFRASPRQ Sbjct: 2 SSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQ 61 Query: 530 SDVMIVAGTLTNKMAPALRKVYDXMPDPXWVISMGXCANGGG 655 SDVMIVAGTLTNKMAPALRKVYD MP+P +V+SMG CANGGG Sbjct: 62 SDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGG 103 >AK128713-1|BAC87587.1| 155|Homo sapiens C 1.6.5.3). protein. Length = 155 Score = 153 bits (371), Expect = 5e-37 Identities = 69/81 (85%), Positives = 75/81 (92%) Frame = +2 Query: 350 SNMAEMAVARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQ 529 S+ E VA+LDDL+NW R+ SLWPMTFGLACCAVEMMH+AAPRYDMDR+GVVFRASPRQ Sbjct: 64 SSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQ 123 Query: 530 SDVMIVAGTLTNKMAPALRKV 592 SDVMIVAGTLTNKMAPALRKV Sbjct: 124 SDVMIVAGTLTNKMAPALRKV 144 >AF060512-1|AAG43130.1| 214|Homo sapiens My017 protein protein. Length = 214 Score = 152 bits (368), Expect = 1e-36 Identities = 79/133 (59%), Positives = 95/133 (71%) Frame = +2 Query: 191 MQAIKALGATSPNTVLSFMKKGVFTPVVSQIRDTHLPAPNPTEKRPYSPFQDASNMAEMA 370 ++ + LG S + L+ +GV V + + PA + R +P S+ E Sbjct: 9 LRGFRILGLRS-SVGLAVQARGVHQSVATDGPSSTQPAL--PKARAVAP--KPSSRGEYV 63 Query: 371 VARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVA 550 VA+LDDL+NW R+ SLWPMTFGLACCAVEMMH+AAPRYDMDR+GVVFRASPRQSDVMIVA Sbjct: 64 VAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVA 123 Query: 551 GTLTNKMAPALRK 589 GTLTNKMAPALRK Sbjct: 124 GTLTNKMAPALRK 136 >Y07707-1|CAA68976.1| 238|Homo sapiens ITBA4 protein. Length = 238 Score = 29.9 bits (64), Expect = 8.3 Identities = 18/47 (38%), Positives = 27/47 (57%) Frame = +2 Query: 140 VIANIIVVTKFVLIFSIMQAIKALGATSPNTVLSFMKKGVFTPVVSQ 280 VIA + V K V + +A+K L T P TV++ +KKG V+S+ Sbjct: 36 VIAEAVGVKKTVKYEAAGEAVKTLKKTQP-TVINNLKKGAVEDVISR 81 >EF216689-1|ABN11235.1| 690|Homo sapiens NF-kappaB repressing factor protein. Length = 690 Score = 29.9 bits (64), Expect = 8.3 Identities = 18/47 (38%), Positives = 27/47 (57%) Frame = +2 Query: 140 VIANIIVVTKFVLIFSIMQAIKALGATSPNTVLSFMKKGVFTPVVSQ 280 VIA + V K V + +A+K L T P TV++ +KKG V+S+ Sbjct: 488 VIAEAVGVKKTVKYEAAGEAVKTLKKTQP-TVINNLKKGAVEDVISR 533 >EF216688-1|ABN11234.1| 690|Homo sapiens NF-kappaB repressing factor protein. Length = 690 Score = 29.9 bits (64), Expect = 8.3 Identities = 18/47 (38%), Positives = 27/47 (57%) Frame = +2 Query: 140 VIANIIVVTKFVLIFSIMQAIKALGATSPNTVLSFMKKGVFTPVVSQ 280 VIA + V K V + +A+K L T P TV++ +KKG V+S+ Sbjct: 488 VIAEAVGVKKTVKYEAAGEAVKTLKKTQP-TVINNLKKGAVEDVISR 533 >EF165092-1|ABM55377.1| 599|Homo sapiens NF-kappaB repressing factor protein. Length = 599 Score = 29.9 bits (64), Expect = 8.3 Identities = 18/47 (38%), Positives = 27/47 (57%) Frame = +2 Query: 140 VIANIIVVTKFVLIFSIMQAIKALGATSPNTVLSFMKKGVFTPVVSQ 280 VIA + V K V + +A+K L T P TV++ +KKG V+S+ Sbjct: 397 VIAEAVGVKKTVKYEAAGEAVKTLKKTQP-TVINNLKKGAVEDVISR 442 >BC068514-1|AAH68514.1| 690|Homo sapiens NF-kappaB repressing factor protein. Length = 690 Score = 29.9 bits (64), Expect = 8.3 Identities = 18/47 (38%), Positives = 27/47 (57%) Frame = +2 Query: 140 VIANIIVVTKFVLIFSIMQAIKALGATSPNTVLSFMKKGVFTPVVSQ 280 VIA + V K V + +A+K L T P TV++ +KKG V+S+ Sbjct: 488 VIAEAVGVKKTVKYEAAGEAVKTLKKTQP-TVINNLKKGAVEDVISR 533 >BC047878-1|AAH47878.1| 690|Homo sapiens NF-kappaB repressing factor protein. Length = 690 Score = 29.9 bits (64), Expect = 8.3 Identities = 18/47 (38%), Positives = 27/47 (57%) Frame = +2 Query: 140 VIANIIVVTKFVLIFSIMQAIKALGATSPNTVLSFMKKGVFTPVVSQ 280 VIA + V K V + +A+K L T P TV++ +KKG V+S+ Sbjct: 488 VIAEAVGVKKTVKYEAAGEAVKTLKKTQP-TVINNLKKGAVEDVISR 533 >BC040379-1|AAH40379.1| 690|Homo sapiens NF-kappaB repressing factor protein. Length = 690 Score = 29.9 bits (64), Expect = 8.3 Identities = 18/47 (38%), Positives = 27/47 (57%) Frame = +2 Query: 140 VIANIIVVTKFVLIFSIMQAIKALGATSPNTVLSFMKKGVFTPVVSQ 280 VIA + V K V + +A+K L T P TV++ +KKG V+S+ Sbjct: 488 VIAEAVGVKKTVKYEAAGEAVKTLKKTQP-TVINNLKKGAVEDVISR 533 >AY208891-1|AAP43025.1| 690|Homo sapiens transcription factor NRF protein. Length = 690 Score = 29.9 bits (64), Expect = 8.3 Identities = 18/47 (38%), Positives = 27/47 (57%) Frame = +2 Query: 140 VIANIIVVTKFVLIFSIMQAIKALGATSPNTVLSFMKKGVFTPVVSQ 280 VIA + V K V + +A+K L T P TV++ +KKG V+S+ Sbjct: 488 VIAEAVGVKKTVKYEAAGEAVKTLKKTQP-TVINNLKKGAVEDVISR 533 >AK127759-1|BAC87117.1| 294|Homo sapiens r (EC 1.6.5.3). protein. Length = 294 Score = 29.9 bits (64), Expect = 8.3 Identities = 12/22 (54%), Positives = 16/22 (72%) Frame = +2 Query: 350 SNMAEMAVARLDDLLNWGRKGS 415 S+ E VA+LDDL+NW R+ S Sbjct: 57 SSRGEYVVAKLDDLVNWARRVS 78 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 95,070,288 Number of Sequences: 237096 Number of extensions: 1970687 Number of successful extensions: 3997 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3881 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3997 length of database: 76,859,062 effective HSP length: 87 effective length of database: 56,231,710 effective search space used: 7366354010 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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