Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_N09
         (656 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11770.1 68418.m01374 NADH-ubiquinone oxidoreductase 20 kDa s...   185   3e-47
At2g24700.1 68415.m02951 transcriptional factor B3 family protei...    28   4.8  
At1g04200.1 68414.m00410 expressed protein Contains similarity t...    27   8.3  

>At5g11770.1 68418.m01374 NADH-ubiquinone oxidoreductase 20 kDa
           subunit, mitochondrial identical to NADH-ubiquinone
           oxidoreductase 20 kDa subunit mitochondrial [precursor]
           SP:Q42577 from [Arabidopsis thaliana]; contains Pfam
           profile: PF01058 NADH ubiquinone oxidoreductase, 20 Kd
           subunit
          Length = 218

 Score =  185 bits (450), Expect = 3e-47
 Identities = 82/122 (67%), Positives = 93/122 (76%)
 Frame = +2

Query: 290 THLPAPNPTEKRPYSPFQDASNMAEMAVARLDDLLNWGRKGSLWPMTFGLACCAVEMMHI 469
           T    P P    P  P    S  AE  ++++DDL+NW R GS+WPMTFGLACCAVEMMH 
Sbjct: 44  TSYTRPGPPSTSPPPP--GLSKAAEFVISKVDDLMNWARTGSIWPMTFGLACCAVEMMHT 101

Query: 470 AAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDXMPDPXWVISMGXCANG 649
            A RYD+DR+G++FR SPRQSD MIVAGTLTNKMAPALRKVYD MP+P WVISMG CANG
Sbjct: 102 GAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANG 161

Query: 650 GG 655
           GG
Sbjct: 162 GG 163


>At2g24700.1 68415.m02951 transcriptional factor B3 family protein
           low similarity to reproductive meristem gene 1 from
           [Brassica oleracea var. botrytis] GI:3170424,
           [Arabidopsis thaliana] GI:13604227; contains Pfam
           profile PF02362: B3 DNA binding domain
          Length = 555

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
 Frame = -1

Query: 599 GRTLSSKLEPFCLLKFLLQS---LHQTDGEMLGILRHIGPYHSEVQQYASSLQRSKLDQR 429
           GR LS+  E F +   L      + + +GE++  +  +GP   E+Q    +L+  K+++ 
Sbjct: 63  GRRLSNGWEDFTIAHDLRVGDIVVFRQEGELVFHVTALGPSCCEIQYGEDTLEEDKIEKL 122

Query: 428 SWAKGNLSSPNSISHQVEPQP 366
              +   S   S+  + E  P
Sbjct: 123 CGTENVSSKKKSLKREAESAP 143


>At1g04200.1 68414.m00410 expressed protein Contains similarity to
           gb|Z69902 from C. elegans
          Length = 732

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 397 LGEERFPLAHDLWSSLL 447
           +GE+ FPLA D W+ LL
Sbjct: 27  VGEKSFPLASDFWNKLL 43


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,972,275
Number of Sequences: 28952
Number of extensions: 288829
Number of successful extensions: 712
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)