Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_N08
(506 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821... 62 3e-10
07_03_0571 - 19602755-19603831 61 6e-10
12_02_1080 - 25911521-25911922 29 2.1
05_06_0223 - 26525618-26526112,26526203-26526370,26526649-265274... 29 2.1
03_06_0737 + 35879723-35879990,35880105-35880201,35880464-358805... 29 2.1
03_05_0287 + 22759946-22760836 27 6.5
03_05_0223 - 22087076-22087340,22087448-22087726,22087808-220879... 27 8.7
>10_05_0025 +
8215685-8215716,8215859-8215937,8216340-8216412,
8216712-8216864,8217456-8217569,8217649-8217776,
8219004-8219099,8219479-8219601,8219694-8219810,
8219983-8220104,8220439-8220508
Length = 368
Score = 61.7 bits (143), Expect = 3e-10
Identities = 39/111 (35%), Positives = 63/111 (56%), Gaps = 3/111 (2%)
Frame = +1
Query: 172 KAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERAEVTPPEDD 351
+A+ R+KSV+NIQKIT++MKMV+A+K + + +R + F P D
Sbjct: 60 RALRTRMKSVRNIQKITKAMKMVAASKLRAVQIRTENSRGLWQ---PFTALLGDVPSVDV 116
Query: 352 PKQLFVAMTSDRGLCGAVHT---GVSKVIRNRLSEPGAENIKVICVGDXSR 495
K + VA+TSD+GLCG +++ VSK + S P E+ K + +G+ +
Sbjct: 117 KKNVIVAITSDKGLCGGINSTSVKVSKALHKLTSGPEKES-KYVILGEKGK 166
>07_03_0571 - 19602755-19603831
Length = 358
Score = 60.9 bits (141), Expect = 6e-10
Identities = 36/105 (34%), Positives = 57/105 (54%), Gaps = 11/105 (10%)
Frame = +1
Query: 166 TLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQ-FYERAEVTPP 342
+L+ + R+ SV+N QKIT++MK+V+AAK RA+ + ++RP+ E V+ Y +
Sbjct: 37 SLRELRSRIDSVRNTQKITEAMKLVAAAKVRRAQEAVVSSRPFSEALVEVLYNMNQEIQT 96
Query: 343 ED----------DPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSE 447
ED K V +T +RGLCG+ + V K R+ E
Sbjct: 97 EDIDLPLTRIRPVKKVALVVLTGERGLCGSFNNNVLKKAETRIEE 141
>12_02_1080 - 25911521-25911922
Length = 133
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -2
Query: 136 PPPRLGCPHPVRSVPTFCKFYGCLSVKFTSRRKNVAGRQ 20
P P P P S P + YGC++ RR+ + G +
Sbjct: 33 PVPYCPLPSPSLSTPLHARSYGCVATAREERRRRLDGEE 71
>05_06_0223 -
26525618-26526112,26526203-26526370,26526649-26527473,
26527898-26528004,26529701-26529767
Length = 553
Score = 29.1 bits (62), Expect = 2.1
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 13/97 (13%)
Frame = -3
Query: 474 DHLDVLSTRFAETVADHF---------RYTSVYSSAQTSVR---GHSNKQLLGV-IFGRC 334
D+L ++S A V D F ++ SV T++R GH +++L V I G C
Sbjct: 369 DYLSLVSVLHASPVLDTFILSVQQGGMKHDSVSGDTTTNLRTMPGHKHERLKEVMIIGFC 428
Query: 333 NLSPFIELYCTFTIGTSSFQVTLSTGVFSS*HHLHGL 223
+ + +EL C T+S + T++ H L +
Sbjct: 429 SATSMVELTCHILENTTSLE-TITLDAVCDVHDLENI 464
>03_06_0737 +
35879723-35879990,35880105-35880201,35880464-35880591,
35880686-35880767,35880855-35880918,35880930-35881022,
35881120-35881178,35881391-35881826,35882050-35882120,
35882201-35882351
Length = 482
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = -1
Query: 449 GSLRRLRITLDTPVCTAPHKPLSEVIAT---NNCLGSSSGGVTSA 324
GSL+R R++ PH S I + C+GSS G TSA
Sbjct: 337 GSLQRNRVSYQVDSLMLPHPDPSHAICLPSHDTCMGSSGHGSTSA 381
>03_05_0287 + 22759946-22760836
Length = 296
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 259 RAERDLKAARPYGEGAVQFYERAEVTPPEDDPKQLFVAMTSDRGL 393
R+ DLK P+ G + ERA + ++DP +FV D G+
Sbjct: 223 RSVIDLKPVLPWPIGKPKGKERACLAVVDEDPDVIFVGTEEDDGV 267
>03_05_0223 - 22087076-22087340,22087448-22087726,22087808-22087950,
22088029-22088133,22088272-22088465,22088561-22088753,
22088893-22089202,22089335-22089558,22089862-22089990,
22090019-22090078,22090426-22090617,22091463-22091522,
22091606-22091688,22092473-22092611,22092949-22093083,
22093187-22093462
Length = 928
Score = 27.1 bits (57), Expect = 8.7
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Frame = +1
Query: 142 HQPNRNMATLKAISIRLKSVKN--IQKITQSMKMVSAAK-YTRAERDLKAARPYGEGAVQ 312
+ P+R A +K + RLKS K ++++ + +SA K R +++ + A YG+ A+
Sbjct: 848 YDPDRERAQMKKMKKRLKSEKKGAMRELRKDNYFLSAVKEKERIKQEQERAEKYGK-AMA 906
Query: 313 FYERAE 330
F + E
Sbjct: 907 FLQEQE 912
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,870,712
Number of Sequences: 37544
Number of extensions: 362366
Number of successful extensions: 986
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -