Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_N08
         (506 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)             127   5e-30
SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)            29   2.9  
SB_7532| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.1  
SB_23672| Best HMM Match : PHD (HMM E-Value=0.00049)                   28   5.1  
SB_30760| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_53788| Best HMM Match : KH_1 (HMM E-Value=0)                        27   8.9  
SB_27239| Best HMM Match : Ion_trans (HMM E-Value=3.8e-39)             27   8.9  
SB_5668| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.9  
SB_48438| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_15138| Best HMM Match : CLN3 (HMM E-Value=4.4e-05)                  27   8.9  

>SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score =  127 bits (307), Expect = 5e-30
 Identities = 54/109 (49%), Positives = 83/109 (76%)
 Frame = +1

Query: 178 ISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERAEVTPPEDDPK 357
           +S+RL+SVKNIQKIT+SMKMVSAAK+ RAE++LK+AR YG+GA   Y++ E+    +DPK
Sbjct: 62  VSLRLRSVKNIQKITKSMKMVSAAKFGRAEKELKSARAYGDGATALYDKVEIKQESEDPK 121

Query: 358 QLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDXSRGIL 504
            L V ++SDRGLCG +H+G++K ++  ++   + N+ ++  GD ++ IL
Sbjct: 122 HLIVVLSSDRGLCGGIHSGLAKAVKASIAGNPSRNVGIVSFGDKTKQIL 170


>SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)
          Length = 1050

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 240 HHLHGLCDFLDIFHRFKTDGNGLQSSHIPVWL 145
           +H+   C+  + F+R +  G G    H+ VWL
Sbjct: 595 NHIRNRCNVENFFYRIEFQGRGTAHVHLLVWL 626


>SB_7532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 322 RAEVTPPEDDPKQLFVAMTSDRGLCG 399
           RA  TPPE   K   + + S  GLCG
Sbjct: 263 RARATPPEVTDKMAILRLPSGLGLCG 288


>SB_23672| Best HMM Match : PHD (HMM E-Value=0.00049)
          Length = 370

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -3

Query: 504 QDTARXISHTDHLDVLSTRFAETVADHFRYTSVYSSAQTSVRGHSNKQ 361
           +D+   + HTD+  V  +R  E V DH   T+   + + S +  S+ Q
Sbjct: 75  EDSQMPLDHTDNTPVTHSREFEAVDDHTPPTTPTETTRKSAKRQSDSQ 122


>SB_30760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1868

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 319  HRTVLHLHHRDEQLSGHAQHGC 254
            +R  LH+ H +++L  H  H C
Sbjct: 1068 NRNTLHVKHANQRLGSHGNHSC 1089


>SB_53788| Best HMM Match : KH_1 (HMM E-Value=0)
          Length = 356

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = -3

Query: 429 DHFRYTSV-YSSAQTSVRGHSNKQLLGVIFGRCNLSPFIELYCTFTIGTSSFQVTLSTGV 253
           +H  Y ++ YS   TS  GH+N QL G  F   +  PF  L     +G ++     +T  
Sbjct: 177 EHALYNNIMYSGLTTSRAGHTNGQLAGSAFS--SGLPFSALSGLSALGLTNTATAQNTTT 234

Query: 252 FSS*HHL 232
            ++ H L
Sbjct: 235 SATNHIL 241


>SB_27239| Best HMM Match : Ion_trans (HMM E-Value=3.8e-39)
          Length = 307

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 455 APGSLRRLRITLDTPVCTAPHKPLSEVI 372
           +PG LR LR+T   PVC A  + L  +I
Sbjct: 103 SPGLLRVLRVTKGGPVCQANRQLLVAII 130


>SB_5668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 50

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +3

Query: 96  TLRTGCGHPSRGGGLPSAKQEYGYFEGHFH 185
           T  T   HPS+G G      E GY +G  H
Sbjct: 20  TQSTCAPHPSKGVGCTGVADEGGYLKGQCH 49


>SB_48438| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 353

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = +2

Query: 110 VWAPKSWRWFTISQTGIWL 166
           VW  + W W+T++   +W+
Sbjct: 54  VWYQEKWEWYTLNNRRLWV 72


>SB_15138| Best HMM Match : CLN3 (HMM E-Value=4.4e-05)
          Length = 662

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +1

Query: 13  LKIVGQRHFFVDW*ILPINTHKICKMLGRFGPGVGTQVVAVVYHQPNRNMA 165
           L +    +FFV+  +LP+      K +  F  G G  +V  VY+    ++A
Sbjct: 106 LSVTSVGYFFVEAGLLPLTAFYSEKTVFAFSGGTGFGLVGTVYYTGKHSLA 156


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,911,182
Number of Sequences: 59808
Number of extensions: 402786
Number of successful extensions: 943
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)