Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_N08
(506 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial... 63 1e-10
At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast... 59 2e-09
At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast... 54 7e-08
At2g36670.2 68415.m04498 aspartyl protease family protein contai... 28 3.1
At2g36670.1 68415.m04497 aspartyl protease family protein contai... 28 3.1
At5g24280.1 68418.m02856 expressed protein ; expression supporte... 27 5.5
At4g22970.1 68417.m03315 peptidase C50 family protein contains P... 27 5.5
At3g21200.1 68416.m02679 expressed protein 27 5.5
At4g33430.1 68417.m04750 brassinosteroid insensitive 1-associate... 27 9.6
At1g67623.1 68414.m07708 F-box family protein hypothetical prote... 27 9.6
>At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial
(ATPC) identical to SP|Q96250 ATP synthase gamma chain,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; contains Pfam profile: PF00231 ATP synthase
Length = 325
Score = 62.9 bits (146), Expect = 1e-10
Identities = 39/119 (32%), Positives = 70/119 (58%), Gaps = 2/119 (1%)
Frame = +1
Query: 154 RNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERAEV 333
R+++T + + R+KSVKNIQKIT++MKMV+A+K + + +R + F
Sbjct: 41 RSIST-QVVRNRMKSVKNIQKITKAMKMVAASKLRAVQGRAENSRGLWQ---PFTALLGD 96
Query: 334 TPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIR--NRLSEPGAENIKVICVGDXSRGIL 504
P D K + V ++SD+GLCG +++ V KV R +L+ + ++ + VG+ ++ I+
Sbjct: 97 NPSIDVKKSVVVTLSSDKGLCGGINSTVVKVSRALYKLNAGPEKEVQFVIVGEKAKAIM 155
>At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast
(ATPC1) identical to SP|Q01908 ATP synthase gamma chain
1, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
thaliana}
Length = 373
Score = 58.8 bits (136), Expect = 2e-09
Identities = 37/106 (34%), Positives = 53/106 (50%), Gaps = 11/106 (10%)
Frame = +1
Query: 163 ATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERAEVTPP 342
A+L+ + R+ SVKN QKIT++MK+V+AAK RA+ + RP+ E V+
Sbjct: 51 ASLRELRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQ 110
Query: 343 EDD-----------PKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSE 447
DD K V +T DRGLCG + + K R+ E
Sbjct: 111 TDDVDVPLTKVRPVKKVALVVVTGDRGLCGGFNNFIIKKAEARIKE 156
>At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast
(ATPC2) identical to SP|Q01909 ATP synthase gamma chain
2, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; contains Pfam profile: PF00231 ATP synthase;
similar to ATP synthase gamma-subunit GI:21241 from
[Spinacia oleracea]
Length = 386
Score = 53.6 bits (123), Expect = 7e-08
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 11/123 (8%)
Frame = +1
Query: 163 ATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQ-FYERAEVTP 339
A ++ + R+ SVKN QKIT++M++V+AA+ RA+ + RP+ E V+ Y +
Sbjct: 61 AGIRELRERIDSVKNTQKITEAMRLVAAARVRRAQDAVIKGRPFTETLVEILYSINQSAQ 120
Query: 340 PEDDPKQL----------FVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDX 489
ED L V +T D+GLCG + V+K R+ E I + +
Sbjct: 121 LEDIDFPLSIVRPVKRVALVVVTGDKGLCGGFNNAVTKKATLRVQELKQRGIDCVVISVG 180
Query: 490 SRG 498
+G
Sbjct: 181 KKG 183
>At2g36670.2 68415.m04498 aspartyl protease family protein contains
Pfam profile: PF00026 eukaryotic aspartyl protease
Length = 507
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 461 FSAPGSLRRLRITLDTPVCTAPHKPLSEVIATNNCLGSS 345
F APGSL +T P+C++ + + + NN G S
Sbjct: 147 FDAPGSLTAGSVTCSDPICSSVFQTTAAQCSENNQCGYS 185
>At2g36670.1 68415.m04497 aspartyl protease family protein contains
Pfam profile: PF00026 eukaryotic aspartyl protease
Length = 512
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 461 FSAPGSLRRLRITLDTPVCTAPHKPLSEVIATNNCLGSS 345
F APGSL +T P+C++ + + + NN G S
Sbjct: 152 FDAPGSLTAGSVTCSDPICSSVFQTTAAQCSENNQCGYS 190
>At5g24280.1 68418.m02856 expressed protein ; expression supported by
MPSS
Length = 1634
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 136 PPPRLGCPHPVRSVPTFCKFYGCLSVKFTS 47
PPP G P PT C +G L+++ +S
Sbjct: 1249 PPPESGIPSITNPWPTPCSQFGVLAIRSSS 1278
>At4g22970.1 68417.m03315 peptidase C50 family protein contains Pfam
PF03568: Peptidase family C50
Length = 1773
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 195 FKTDGNGLQSSHIPVWLMVNHRHDLGAH 112
F++DGN L +SH W+ H+ LG H
Sbjct: 1190 FESDGNELSASH---WVSFFHQASLGTH 1214
>At3g21200.1 68416.m02679 expressed protein
Length = 317
Score = 27.5 bits (58), Expect = 5.5
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -1
Query: 458 SAPGSLR-RLRITLDTPVCTAPHKPLSEVIATNNCLGSSSGGVTSALS 318
S P SLR + TLDTP + HKP + + + + SS G S L+
Sbjct: 35 SRPISLRCSVSTTLDTPATASTHKPFPAEV-SRSIMELSSVGTLSTLT 81
>At4g33430.1 68417.m04750 brassinosteroid insensitive 1-associated
receptor kinase 1 (BAK1) / somatic embryogenesis
receptor-like kinase 3 (SERK3) identical to SP|Q94F62
BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase
1 precursor (EC 2.7.1.37) (BRI1-associated receptor
kinase 1) (Somatic embryogenesis receptor-like kinase 3)
{Arabidopsis thaliana}; contains Pfam domains PF00560:
Leucine Rich Repeat and PF00069: Protein kinase domain;
identical to cDNA somatic embryogenesis receptor-like
kinase 3 (SERK3) GI:14573458
Length = 615
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 319 ERAEVTPPEDDPKQLFVAMTSDRGL 393
ER E PP D PK+ +A+ S RGL
Sbjct: 377 ERPESQPPLDWPKRQRIALGSARGL 401
>At1g67623.1 68414.m07708 F-box family protein hypothetical protein
; similar to SKP1 interacting partner 2 (SKIP2)
TIGR_Ath1:At5g67250
Length = 296
Score = 26.6 bits (56), Expect = 9.6
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +1
Query: 190 LKSVKNIQKITQSMKMVSAAKYTRAERDLKAAR--PYGEGAVQFYER-AEVTPPE 345
L +V+N++ +++S + + KY LK P+ E + +F ER E PE
Sbjct: 44 LSAVRNLRLVSKSFRRICDEKYVFYRLSLKEIEFLPWHENSAKFIERCTESRNPE 98
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,331,043
Number of Sequences: 28952
Number of extensions: 274188
Number of successful extensions: 680
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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