Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_M22
(655 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9U762 Cluster: 40S ribosomal protein S6; n=10; Culicim... 202 4e-51
UniRef50_P62753 Cluster: 40S ribosomal protein S6; n=203; Eukary... 198 7e-50
UniRef50_A7SGC3 Cluster: Predicted protein; n=5; Eumetazoa|Rep: ... 190 3e-47
UniRef50_P29327-2 Cluster: Isoform B of P29327 ; n=3; Drosophila... 173 4e-42
UniRef50_A0CU37 Cluster: Chromosome undetermined scaffold_28, wh... 157 2e-37
UniRef50_A4VD76 Cluster: Putative uncharacterized protein; n=1; ... 154 2e-36
UniRef50_A5K858 Cluster: 40S ribosomal protein S6, putative; n=5... 146 4e-34
UniRef50_A2EFM7 Cluster: Ribosomal protein S6e, putative; n=2; T... 138 1e-31
UniRef50_O15598 Cluster: Ribosomal protein S6; n=6; Entamoeba hi... 133 4e-30
UniRef50_UPI00005A146E Cluster: PREDICTED: similar to 40S riboso... 123 4e-27
UniRef50_Q7QSH4 Cluster: GLP_64_20707_19961; n=1; Giardia lambli... 113 3e-24
UniRef50_Q98SA3 Cluster: 40S ribosomal protein S6; n=1; Guillard... 110 3e-23
UniRef50_Q9NE83 Cluster: 40S ribosomal protein S6; n=9; Trypanos... 101 1e-20
UniRef50_Q8SRY0 Cluster: 40S ribosomal protein S6; n=1; Encephal... 90 5e-17
UniRef50_A0DEZ7 Cluster: Chromosome undetermined scaffold_48, wh... 81 2e-14
UniRef50_A2A3R7 Cluster: Ribosomal protein S6; n=1; Homo sapiens... 80 5e-14
UniRef50_Q8U3H8 Cluster: 30S ribosomal protein S6e; n=4; Archaea... 64 3e-09
UniRef50_Q5JDK8 Cluster: 30S ribosomal protein S6e; n=1; Thermoc... 64 4e-09
UniRef50_UPI00015BAF12 Cluster: SSU ribosomal protein S6E; n=1; ... 60 3e-08
UniRef50_Q2NGM7 Cluster: 30S ribosomal protein S6e; n=2; Methano... 58 2e-07
UniRef50_O29739 Cluster: 30S ribosomal protein S6e; n=7; Euryarc... 58 2e-07
UniRef50_Q9HMJ5 Cluster: 30S ribosomal protein S6e; n=6; Halobac... 56 1e-06
UniRef50_Q3LVW0 Cluster: Ribosomal protein S6; n=1; Bigelowiella... 55 1e-06
UniRef50_Q980A6 Cluster: 30S ribosomal protein S6e; n=5; Sulfolo... 50 4e-05
UniRef50_A7IAP8 Cluster: Ribosomal protein S6e; n=2; Candidatus ... 50 6e-05
UniRef50_A2BJZ7 Cluster: 30S ribosomal protein S6e; n=2; Desulfu... 49 9e-05
UniRef50_Q6LXY7 Cluster: 30S ribosomal protein S6e; n=4; Archaea... 49 9e-05
UniRef50_Q9Y9B6 Cluster: 30S ribosomal protein S6e; n=1; Aeropyr... 48 2e-04
UniRef50_A0RYX5 Cluster: Ribosomal protein S6E; n=1; Cenarchaeum... 45 0.001
UniRef50_UPI0000DC1AEC Cluster: UPI0000DC1AEC related cluster; n... 44 0.003
UniRef50_Q8ZX25 Cluster: 30S ribosomal protein S6e; n=5; Thermop... 44 0.003
UniRef50_Q01CM6 Cluster: Chromosome 03 contig 1, DNA sequence; n... 42 0.010
UniRef50_Q978W7 Cluster: 30S ribosomal protein S6e; n=5; Thermop... 42 0.013
UniRef50_A7DQN0 Cluster: Ribosomal protein S6e; n=1; Candidatus ... 41 0.030
UniRef50_Q8PU79 Cluster: 30S ribosomal protein S6e; n=8; Euryarc... 41 0.030
UniRef50_Q74MJ5 Cluster: 30S ribosomal protein S6e; n=1; Nanoarc... 40 0.069
UniRef50_Q4V5Z5 Cluster: IP07914p; n=1; Drosophila melanogaster|... 37 0.49
UniRef50_A6L045 Cluster: Putative uncharacterized protein; n=1; ... 36 1.1
UniRef50_Q87BM0 Cluster: Putative uncharacterized protein; n=1; ... 35 1.5
UniRef50_A4JQL7 Cluster: Putative uncharacterized protein; n=1; ... 35 2.0
UniRef50_O86476 Cluster: Clumping factor B precursor; n=31; Stap... 33 4.5
UniRef50_Q6N427 Cluster: Phytoene dehydrogenase-related protein;... 33 6.0
UniRef50_A0X1E3 Cluster: Diguanylate cyclase; n=2; Shewanella|Re... 33 7.9
UniRef50_A2F5X7 Cluster: Putative uncharacterized protein; n=1; ... 33 7.9
>UniRef50_Q9U762 Cluster: 40S ribosomal protein S6; n=10;
Culicimorpha|Rep: 40S ribosomal protein S6 - Aedes
albopictus (Forest day mosquito)
Length = 349
Score = 202 bits (494), Expect = 4e-51
Identities = 91/117 (77%), Positives = 101/117 (86%)
Frame = +3
Query: 42 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 221
MKLNVS+PATG QK FEV+D+HKLR FY+KRMGAE+ AD LGDEWKGYV ++AGGNDKQG
Sbjct: 1 MKLNVSFPATGAQKTFEVMDDHKLRHFYDKRMGAEITADHLGDEWKGYVFKIAGGNDKQG 60
Query: 222 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSGLGSCYCAQG 392
FPMKQGVLTN+RVRLL+ KGHSCYRPRR GERKRKSVRGCIVD NLS L +G
Sbjct: 61 FPMKQGVLTNTRVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDQNLSALALIVVKKG 117
Score = 117 bits (282), Expect = 2e-25
Identities = 57/78 (73%), Positives = 67/78 (85%)
Frame = +1
Query: 367 LALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGK 546
LAL++V+KG ++IPGLTD V RRLGPKRAS IRKL+NL+KEDDVR+YVVKR LP K+GK
Sbjct: 109 LALIVVKKGEKDIPGLTDTTVLRRLGPKRASNIRKLYNLTKEDDVRQYVVKRPLPEKDGK 168
Query: 547 ENAKPRHKAPKIQRLVTP 600
KPR KAPKIQRL+TP
Sbjct: 169 ---KPRTKAPKIQRLITP 183
>UniRef50_P62753 Cluster: 40S ribosomal protein S6; n=203;
Eukaryota|Rep: 40S ribosomal protein S6 - Homo sapiens
(Human)
Length = 249
Score = 198 bits (484), Expect = 7e-50
Identities = 91/117 (77%), Positives = 100/117 (85%)
Frame = +3
Query: 42 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 221
MKLN+S+PATGCQKL EV DE KLR FYEKRM EV AD LG+EWKGYV+R++GGNDKQG
Sbjct: 1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQG 60
Query: 222 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSGLGSCYCAQG 392
FPMKQGVLT+ RVRLL+SKGHSCYRPRR GERKRKSVRGCIVDANLS L +G
Sbjct: 61 FPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKG 117
Score = 116 bits (279), Expect = 5e-25
Identities = 61/79 (77%), Positives = 68/79 (86%)
Frame = +1
Query: 364 VLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEG 543
VL LVIV+KG ++IPGLTD VPRRLGPKRAS+IRKLFNLSKEDDVR+YVV++ L KEG
Sbjct: 108 VLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYVVRKPL-NKEG 166
Query: 544 KENAKPRHKAPKIQRLVTP 600
K KPR KAPKIQRLVTP
Sbjct: 167 K---KPRTKAPKIQRLVTP 182
>UniRef50_A7SGC3 Cluster: Predicted protein; n=5; Eumetazoa|Rep:
Predicted protein - Nematostella vectensis
Length = 245
Score = 190 bits (462), Expect = 3e-47
Identities = 84/117 (71%), Positives = 95/117 (81%)
Frame = +3
Query: 42 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 221
MKLN+SYP TGCQKL E+ DE K+R FY+KRM EV + LGDEWKGYV R+ GGNDKQG
Sbjct: 1 MKLNISYPVTGCQKLIEIEDERKVRSFYDKRMAMEVSGECLGDEWKGYVFRITGGNDKQG 60
Query: 222 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSGLGSCYCAQG 392
FPMKQG++TN RVRLL+SKGHSCYRPRR GERKRKSVRGCIVD+ LS L +G
Sbjct: 61 FPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSQLSVLSLVIVKKG 117
Score = 121 bits (291), Expect = 2e-26
Identities = 58/79 (73%), Positives = 67/79 (84%)
Frame = +1
Query: 364 VLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEG 543
VL+LVIV+KG Q+IPGLTD +PRRLGPKR KIRK+FNLSKEDDVR+YV++R LP KEG
Sbjct: 108 VLSLVIVKKGEQDIPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVRQYVIRRPLPEKEG 167
Query: 544 KENAKPRHKAPKIQRLVTP 600
K K + KAPKIQRLVTP
Sbjct: 168 K---KAKSKAPKIQRLVTP 183
>UniRef50_P29327-2 Cluster: Isoform B of P29327 ; n=3; Drosophila
melanogaster|Rep: Isoform B of P29327 - Drosophila
melanogaster (Fruit fly)
Length = 200
Score = 173 bits (420), Expect = 4e-42
Identities = 83/109 (76%), Positives = 92/109 (84%)
Frame = +3
Query: 42 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 221
MKLNVSYPATGCQKLFEVVDEHKLR+FYEKRMG VEAD LGDEWKGY LR+AGGNDKQG
Sbjct: 1 MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQG 60
Query: 222 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSGL 368
FPMKQGVLT+ R+RLL K HSC+ PR + RK K+VR V+AN+S L
Sbjct: 61 FPMKQGVLTHGRLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSAL 108
Score = 34.3 bits (75), Expect = 2.6
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = +1
Query: 430 PRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPK 579
P RLGP R+S I K++ L +EDD V+P K + + K R A K
Sbjct: 119 PCRLGPVRSSNISKIYYLCEEDD-------EVIPVKLQRRHQKKRQNATK 161
>UniRef50_A0CU37 Cluster: Chromosome undetermined scaffold_28, whole
genome shotgun sequence; n=6; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_28,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 315
Score = 157 bits (382), Expect = 2e-37
Identities = 69/106 (65%), Positives = 84/106 (79%)
Frame = +3
Query: 42 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 221
MK N+SYP TG QK E+ D+ K IF++KRMG VEAD LG+E+KGYVL++ GGNDKQG
Sbjct: 1 MKFNISYPLTGAQKTVEIDDDKKCSIFFDKRMGQVVEADNLGEEYKGYVLKITGGNDKQG 60
Query: 222 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANL 359
FPM+QGVL RVR+LM KGH YRPR+DGE KRKS+RGCIV ++
Sbjct: 61 FPMRQGVLFKGRVRILMRKGHKGYRPRKDGEMKRKSIRGCIVGQDI 106
Score = 88.6 bits (210), Expect = 1e-16
Identities = 47/82 (57%), Positives = 59/82 (71%), Gaps = 3/82 (3%)
Frame = +1
Query: 361 RVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDD---VRRYVVKRVLP 531
RVLAL +V+KGA EI GLTD NVPRRLGPKR +K+R+LF K D V++ +++R
Sbjct: 107 RVLALQVVKKGANEIAGLTDQNVPRRLGPKRLTKLRRLFGFKKADGVAIVQKNLIRRTWT 166
Query: 532 AKEGKENAKPRHKAPKIQRLVT 597
K+GK+ R KAPKIQRLVT
Sbjct: 167 TKDGKK----RQKAPKIQRLVT 184
>UniRef50_A4VD76 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 293
Score = 154 bits (374), Expect = 2e-36
Identities = 68/106 (64%), Positives = 82/106 (77%)
Frame = +3
Query: 42 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 221
MK N+SYP TG QK E+ D+ K IF +K+MG EVE D LGDE+KGYV ++AGGNDK G
Sbjct: 1 MKFNISYPLTGAQKCIEIDDDKKCNIFMDKKMGQEVEGDTLGDEFKGYVFKIAGGNDKDG 60
Query: 222 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANL 359
FPMKQGV+ RVRLL+S+GHSC+ RR G RKRKSVRGCIV ++
Sbjct: 61 FPMKQGVMVRGRVRLLLSEGHSCFTSRRSGFRKRKSVRGCIVGPDM 106
Score = 87.8 bits (208), Expect = 2e-16
Identities = 46/89 (51%), Positives = 61/89 (68%), Gaps = 3/89 (3%)
Frame = +1
Query: 343 LLTPISRVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDD---VRRYV 513
++ P RVLAL IV+KG EI GLT +PR+LGPKRA+ I+KLF L KEDD +++ V
Sbjct: 101 IVGPDMRVLALQIVKKGVAEIDGLTTVTLPRKLGPKRANNIKKLFGLKKEDDPILIKKSV 160
Query: 514 VKRVLPAKEGKENAKPRHKAPKIQRLVTP 600
++R +GK+ R K PKIQRL+TP
Sbjct: 161 IRRTFKTAKGKD----RTKCPKIQRLITP 185
>UniRef50_A5K858 Cluster: 40S ribosomal protein S6, putative; n=5;
Plasmodium|Rep: 40S ribosomal protein S6, putative -
Plasmodium vivax
Length = 391
Score = 146 bits (354), Expect = 4e-34
Identities = 69/117 (58%), Positives = 82/117 (70%)
Frame = +3
Query: 42 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 221
MKLN+S P QK E+ DE KL F EKR+G V D +G+E+ GYV R+ GGNDKQG
Sbjct: 42 MKLNISNPLNNVQKSIEIDDEKKLLPFMEKRIGNVVPGDSIGEEFLGYVFRITGGNDKQG 101
Query: 222 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSGLGSCYCAQG 392
FPM QGVLTN+RVRLL KG CYRPR+ GE++RKSVRGCIV +LS L +G
Sbjct: 102 FPMMQGVLTNNRVRLLFKKGMKCYRPRKKGEKRRKSVRGCIVGQDLSALNLTLVKKG 158
Score = 89.0 bits (211), Expect = 9e-17
Identities = 46/77 (59%), Positives = 55/77 (71%)
Frame = +1
Query: 367 LALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGK 546
L L +V+KG EIPGLTD V ++LGPKRA+KIRKLFNL K DDVR+YV+ R +
Sbjct: 150 LNLTLVKKGTNEIPGLTDKAVGKKLGPKRATKIRKLFNLDKTDDVRKYVIGRAI-----S 204
Query: 547 ENAKPRHKAPKIQRLVT 597
+N K R PKIQRLVT
Sbjct: 205 KNGKNRFIKPKIQRLVT 221
>UniRef50_A2EFM7 Cluster: Ribosomal protein S6e, putative; n=2;
Trichomonas vaginalis G3|Rep: Ribosomal protein S6e,
putative - Trichomonas vaginalis G3
Length = 216
Score = 138 bits (334), Expect = 1e-31
Identities = 58/109 (53%), Positives = 81/109 (74%)
Frame = +3
Query: 42 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 221
M++ ++YP G Q + ++ D L YEKR+G ++E ++LG ++KGY+ R+ GG DKQG
Sbjct: 1 MRITLAYPENGTQVVVDIDDPAALNALYEKRVGQDIEGEKLGGQFKGYLFRIGGGFDKQG 60
Query: 222 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSGL 368
FPMKQGV+T R+RLL+ G SCYRPR+DGERKRK+VRGCI+ +S L
Sbjct: 61 FPMKQGVITPRRIRLLLKTGASCYRPRKDGERKRKTVRGCIISDEISAL 109
Score = 56.8 bits (131), Expect = 4e-07
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Frame = +1
Query: 367 LALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLS-KEDDVRRYVVKRVLPAKEG 543
L V+++KG +EI GLT VPRR GPKRAS +R +F ++ + D + V+KR K G
Sbjct: 109 LHCVVLQKGEKEIDGLTTTAVPRRFGPKRASTLRAMFGITDSKFDASKLVLKR--EVKPG 166
Query: 544 KENAKPRHKAPKIQRLVT 597
K +PK+QRL+T
Sbjct: 167 K------FTSPKVQRLIT 178
>UniRef50_O15598 Cluster: Ribosomal protein S6; n=6; Entamoeba
histolytica|Rep: Ribosomal protein S6 - Entamoeba
histolytica
Length = 162
Score = 133 bits (321), Expect = 4e-30
Identities = 61/116 (52%), Positives = 83/116 (71%)
Frame = +3
Query: 45 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGF 224
K+NV+YPATG K F+ +E R F +KR+G EV+A LGDE+KGY+L++ GG DK GF
Sbjct: 1 KINVAYPATGRIKKFDFEEEKNYRPFLDKRIGQEVDASSLGDEFKGYILKITGGCDKDGF 60
Query: 225 PMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSGLGSCYCAQG 392
PM GV TN+RVRLL+ + CY+P R+GER+RK+VRG IV ++S L + +G
Sbjct: 61 PMMTGVATNNRVRLLLDGRNGCYKPLRNGERRRKTVRGAIVAGDISVLNTIVVKKG 116
Score = 65.7 bits (153), Expect = 9e-10
Identities = 28/53 (52%), Positives = 42/53 (79%)
Frame = +1
Query: 364 VLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR 522
VL ++V+KG EI G+T+ +P R GP+RAS RKLFNLS++DDV+++V++R
Sbjct: 107 VLNTIVVKKGEGEIEGVTNDALPMRAGPQRASHFRKLFNLSQKDDVKKFVIRR 159
>UniRef50_UPI00005A146E Cluster: PREDICTED: similar to 40S ribosomal
protein S6; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S6 - Canis familiaris
Length = 154
Score = 123 bits (296), Expect = 4e-27
Identities = 53/77 (68%), Positives = 64/77 (83%)
Frame = +3
Query: 42 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 221
MKLN+S+PATGCQKL E DE K R FYEK M +EV AD LG+EWKGY++R++GGNDKQG
Sbjct: 1 MKLNISFPATGCQKLIEADDERKPRTFYEKHMASEVAADALGEEWKGYMVRISGGNDKQG 60
Query: 222 FPMKQGVLTNSRVRLLM 272
FPMKQ VLT+ R+ LL+
Sbjct: 61 FPMKQDVLTHDRIHLLL 77
Score = 63.3 bits (147), Expect = 5e-09
Identities = 38/71 (53%), Positives = 47/71 (66%), Gaps = 6/71 (8%)
Frame = +1
Query: 397 QEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDD-----VRRYVVKRVLP-AKEGKENAK 558
++IPGLTD PR +GPKRAS+IRKLFNLSKEDD + R + KR+ KE KE K
Sbjct: 80 KDIPGLTDTTEPRHVGPKRASRIRKLFNLSKEDDAAQNSILRKIRKRIYKRMKEAKE--K 137
Query: 559 PRHKAPKIQRL 591
+ + K QRL
Sbjct: 138 RQEQIAKRQRL 148
>UniRef50_Q7QSH4 Cluster: GLP_64_20707_19961; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_64_20707_19961 - Giardia lamblia
ATCC 50803
Length = 248
Score = 113 bits (273), Expect = 3e-24
Identities = 53/108 (49%), Positives = 69/108 (63%)
Frame = +3
Query: 45 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGF 224
K+N+S P TG K + D K + + RM +E + LG+E+ G R+ GGND QGF
Sbjct: 8 KVNISNPVTGANKSLMIEDFRKSQTIHGLRMASEFDGAALGEEYAGCTFRITGGNDAQGF 67
Query: 225 PMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSGL 368
PM QGVL + R RLL+ +G CY RR+GERKRKS+RGCIV +L L
Sbjct: 68 PMYQGVLKSQRARLLLRQGAKCYLHRRNGERKRKSIRGCIVGPDLHAL 115
Score = 59.3 bits (137), Expect = 8e-08
Identities = 37/90 (41%), Positives = 56/90 (62%), Gaps = 5/90 (5%)
Frame = +1
Query: 343 LLTPISRVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNL--SKEDDVRRYVV 516
++ P L++V+V G + +PGLTD VP+RL PKRASKIR+LF L +K D + +V
Sbjct: 107 IVGPDLHALSVVLVDAGDKTLPGLTDVVVPKRLVPKRASKIRRLFGLPTTKVDPKDQMLV 166
Query: 517 KRV---LPAKEGKENAKPRHKAPKIQRLVT 597
+ L + +N + + K PK+QR+VT
Sbjct: 167 CELIKELGHEVTLKNGEKKLKYPKVQRVVT 196
>UniRef50_Q98SA3 Cluster: 40S ribosomal protein S6; n=1; Guillardia
theta|Rep: 40S ribosomal protein S6 - Guillardia theta
(Cryptomonas phi)
Length = 209
Score = 110 bits (264), Expect = 3e-23
Identities = 52/111 (46%), Positives = 74/111 (66%), Gaps = 2/111 (1%)
Frame = +3
Query: 42 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 221
MK N++ P+TG Q E+ DE KLRI Y K++ ++++ +G EW + + GG DKQG
Sbjct: 1 MKFNIANPSTGVQHTIEIDDEDKLRILYGKKLTSKIDGKIIGKEWDKSIFIITGGQDKQG 60
Query: 222 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSGL 368
FPMK+G+L+ SRV++L+ KG + R + GER RKSVRGCIV +S L
Sbjct: 61 FPMKEGILSPSRVKILLKKGSTGCRGYKMKKGERCRKSVRGCIVSPEISVL 111
Score = 38.3 bits (85), Expect = 0.16
Identities = 24/63 (38%), Positives = 37/63 (58%)
Frame = +1
Query: 412 LTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRL 591
+T+ N + L KR+S +RK+ L+K DD+R++ +K AK+ K KIQRL
Sbjct: 125 ITNKNSEKTLTHKRSSNLRKVLCLTKTDDIRKHYIK---IAKDFKNKV-------KIQRL 174
Query: 592 VTP 600
+TP
Sbjct: 175 ITP 177
>UniRef50_Q9NE83 Cluster: 40S ribosomal protein S6; n=9;
Trypanosomatidae|Rep: 40S ribosomal protein S6 -
Leishmania major
Length = 249
Score = 101 bits (243), Expect = 1e-20
Identities = 50/110 (45%), Positives = 73/110 (66%), Gaps = 3/110 (2%)
Frame = +3
Query: 42 MKLNVSYPATGCQKLFEVVDEHKLRI-FYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQ 218
MKLN++YP G K FE+ DE R+ + R+G EV+ G E+KGY+ R+ GG+DK
Sbjct: 1 MKLNIAYPRNGTVKQFEISDEVLRRVQLQDYRLGNEVDGAIFGSEFKGYIFRLRGGSDKD 60
Query: 219 GFPMKQGVLTNSRVRLLMSKGHSCYRPRR--DGERKRKSVRGCIVDANLS 362
GFPM GVL +SRV LL+ +G + R GER+RK+VRGC++ ++++
Sbjct: 61 GFPMVPGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIA 110
Score = 92.3 bits (219), Expect = 9e-18
Identities = 55/97 (56%), Positives = 66/97 (68%)
Frame = +1
Query: 310 ERENVNQFVDVLLTPISRVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSK 489
ER N VL + I+ V + I + G Q I G+TD PRRLGPKRASKIRKLFNLS+
Sbjct: 94 ERRRKNVRGCVLASDIALV-NVTISKVGDQPIEGVTDTTAPRRLGPKRASKIRKLFNLSR 152
Query: 490 EDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVTP 600
+DVR+YVV+R + K GK K R KAPKIQRL+TP
Sbjct: 153 TEDVRKYVVRRRV-VKSGK---KDRLKAPKIQRLITP 185
>UniRef50_Q8SRY0 Cluster: 40S ribosomal protein S6; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S6 -
Encephalitozoon cuniculi
Length = 203
Score = 89.8 bits (213), Expect = 5e-17
Identities = 42/92 (45%), Positives = 64/92 (69%)
Frame = +3
Query: 84 LFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVR 263
+FE+ +++R+ Y+K++G + + LG+E++G ++ + GG+D QGFPM G LT RVR
Sbjct: 1 MFEIERRNEVRL-YDKKIGDQFDGGILGEEFEGTIMEITGGDDYQGFPMVSGHLTKKRVR 59
Query: 264 LLMSKGHSCYRPRRDGERKRKSVRGCIVDANL 359
L+SKG + YR RR G R+RKSVRG IV +
Sbjct: 60 PLLSKGDAGYRCRRKGVRRRKSVRGSIVSEEI 91
Score = 38.7 bits (86), Expect = 0.12
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Frame = +1
Query: 364 VLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAK-- 537
VL L+I+R G +EI GLT+ P++ K+RK+F + E+ ++ +L ++
Sbjct: 93 VLNLIILRPGEKEIDGLTNAVNDVSHLPRKEKKLRKMFGVPDEEKNVVGYIRNILKSECD 152
Query: 538 EGKENAKPRHKAPKIQR 588
+ K+ K RH +++R
Sbjct: 153 DPKKIPKIRHNGKRMKR 169
>UniRef50_A0DEZ7 Cluster: Chromosome undetermined scaffold_48, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_48,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 304
Score = 81.4 bits (192), Expect = 2e-14
Identities = 47/81 (58%), Positives = 56/81 (69%), Gaps = 2/81 (2%)
Frame = +1
Query: 361 RVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKE 540
RVLAL +V+KGA EI GLTD NVPRRLGPKR +K+R+LF K D RV+ ++E
Sbjct: 112 RVLALQVVKKGANEIAGLTDQNVPRRLGPKRLTKLRRLFGFKKAD--------RVISSEE 163
Query: 541 -GKEN-AKPRHKAPKIQRLVT 597
G + K R KAPKIQRLVT
Sbjct: 164 HGPQRYGKKRQKAPKIQRLVT 184
Score = 69.3 bits (162), Expect = 7e-11
Identities = 34/56 (60%), Positives = 39/56 (69%)
Frame = +3
Query: 192 RVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANL 359
R GGNDKQG VL RVR+LM KGH YRPR+DGE KRKS+RGCIV ++
Sbjct: 62 RFTGGNDKQG------VLFKGRVRILMRKGHKGYRPRKDGEMKRKSIRGCIVGQDI 111
>UniRef50_A2A3R7 Cluster: Ribosomal protein S6; n=1; Homo
sapiens|Rep: Ribosomal protein S6 - Homo sapiens (Human)
Length = 91
Score = 79.8 bits (188), Expect = 5e-14
Identities = 35/46 (76%), Positives = 38/46 (82%)
Frame = +3
Query: 42 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWK 179
MKLN+S+PATGCQKL EV DE KLR FYEKRM EV AD LG+EWK
Sbjct: 1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWK 46
>UniRef50_Q8U3H8 Cluster: 30S ribosomal protein S6e; n=4;
Archaea|Rep: 30S ribosomal protein S6e - Pyrococcus
furiosus
Length = 125
Score = 64.1 bits (149), Expect = 3e-09
Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 9/110 (8%)
Frame = +3
Query: 36 AVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQL--------GDEWKGYV- 188
A KL +S P +G K E+ ++ KR+G ++ A +L G E+ V
Sbjct: 2 ATFKLVISDPKSGIAKQVEITGAETEKLI-GKRIGDQIPAKELNINLNELFGKEFPEDVK 60
Query: 189 LRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRG 338
L + GG DK GFPM+ + RVR+L+SKG +RP+ GER++K+VRG
Sbjct: 61 LEIRGGTDKDGFPMRPDIHGPRRVRVLLSKGPG-FRPKEKGERRKKTVRG 109
>UniRef50_Q5JDK8 Cluster: 30S ribosomal protein S6e; n=1;
Thermococcus kodakarensis KOD1|Rep: 30S ribosomal
protein S6e - Pyrococcus kodakaraensis (Thermococcus
kodakaraensis)
Length = 125
Score = 63.7 bits (148), Expect = 4e-09
Identities = 41/117 (35%), Positives = 62/117 (52%), Gaps = 9/117 (7%)
Frame = +3
Query: 36 AVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLG---DEWKGYV------ 188
A KL +S P G K E+ ++ +R+G E+ A +LG E G
Sbjct: 2 ATFKLVISNPKNGVAKQVEISGPEADKLI-GRRIGEEIPASELGLNLSEIFGEEIPADAK 60
Query: 189 LRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANL 359
L++ GG DK GFPM+ V RV++L+S+G +RPR GER++K+V G + N+
Sbjct: 61 LKITGGTDKDGFPMRPDVHGPRRVKILLSRGPG-FRPRERGERRKKTVHGNTISPNI 116
>UniRef50_UPI00015BAF12 Cluster: SSU ribosomal protein S6E; n=1;
Ignicoccus hospitalis KIN4/I|Rep: SSU ribosomal protein
S6E - Ignicoccus hospitalis KIN4/I
Length = 236
Score = 60.5 bits (140), Expect = 3e-08
Identities = 36/95 (37%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Frame = +3
Query: 81 KLFEV-VDEHKLRIFYEKRMGAEVEADQLGDEW-KGYVLRVAGGNDKQGFPMKQGVLTNS 254
K F++ ++ R F KR+G V A LG E KG L + GG+D+ GFPM+ +
Sbjct: 133 KAFQITIEGENARKFIGKRIGETVPASILGIETLKGLQLEIRGGSDESGFPMRPDIPGPV 192
Query: 255 RVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANL 359
+ R L+S G + PR GER+RK+VRG + ++
Sbjct: 193 KKRALLS-GPPGFWPREKGERRRKTVRGNTISEDI 226
>UniRef50_Q2NGM7 Cluster: 30S ribosomal protein S6e; n=2;
Methanobacteriaceae|Rep: 30S ribosomal protein S6e -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 130
Score = 58.0 bits (134), Expect = 2e-07
Identities = 31/77 (40%), Positives = 48/77 (62%)
Frame = +3
Query: 132 RMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDG 311
++G E LG KGY LR+ GG+DK GFPMK+ V R + L++ G + ++P + G
Sbjct: 30 KIGEEFNGGVLG--LKGYKLRITGGSDKNGFPMKEDVDGTRRFKSLVN-GGTGFKPTKKG 86
Query: 312 ERKRKSVRGCIVDANLS 362
R+RK+VRG + ++S
Sbjct: 87 LRRRKTVRGNTIADDIS 103
>UniRef50_O29739 Cluster: 30S ribosomal protein S6e; n=7;
Euryarchaeota|Rep: 30S ribosomal protein S6e -
Archaeoglobus fulgidus
Length = 129
Score = 57.6 bits (133), Expect = 2e-07
Identities = 38/115 (33%), Positives = 63/115 (54%), Gaps = 2/115 (1%)
Frame = +3
Query: 54 VSYPATG--CQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFP 227
+S P TG QK+ E + ++L K++G +V + + D Y L++ GG D+ GFP
Sbjct: 7 ISDPKTGRAYQKVVEGANANRL---IGKQIG-DVISGTIVDLPPDYELKITGGTDRDGFP 62
Query: 228 MKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSGLGSCYCAQG 392
M+ + +R RLL+S G +RP+ G RKRK VRG ++ ++ + + G
Sbjct: 63 MRPDLPGTARRRLLLSGGVG-FRPKEKGLRKRKGVRGRVISKDILQINTVVVKHG 116
>UniRef50_Q9HMJ5 Cluster: 30S ribosomal protein S6e; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S6e -
Halobacterium salinarium (Halobacterium halobium)
Length = 131
Score = 55.6 bits (128), Expect = 1e-06
Identities = 34/101 (33%), Positives = 56/101 (55%)
Frame = +3
Query: 36 AVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDK 215
A ++ V+ P +G FEV D F + +GA V+ +G + GY + + GG+D
Sbjct: 2 ATFQVAVADPESGRTYQFEV-DGQDANRFIGREIGAAVDGGAVGLD--GYTVEITGGSDD 58
Query: 216 QGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRG 338
G PM++ V + + +L+ +G + + P DGERKR +VRG
Sbjct: 59 AGRPMREDVDGSDLMEVLL-EGGAGFNPDEDGERKRVTVRG 98
>UniRef50_Q3LVW0 Cluster: Ribosomal protein S6; n=1; Bigelowiella
natans|Rep: Ribosomal protein S6 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 239
Score = 55.2 bits (127), Expect = 1e-06
Identities = 34/111 (30%), Positives = 60/111 (54%), Gaps = 2/111 (1%)
Frame = +3
Query: 42 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 221
MK+N++ P G Q + DE I K +G +E LG+++ + GG+DKQG
Sbjct: 1 MKINIADPILGTQYSIKRDDEFIEHIIGRK-IGDTIEGSILGEDFSRNEFLINGGHDKQG 59
Query: 222 FPMKQGVLTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSGL 368
F +K+ + T R+++ + KG R +R K+++VRG I+ + +S +
Sbjct: 60 FLLKKNLNTFERLKINVKKGSLGNRSHFKRKNLTKKRTVRGGILSSEISSI 110
>UniRef50_Q980A6 Cluster: 30S ribosomal protein S6e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S6e -
Sulfolobus solfataricus
Length = 214
Score = 50.4 bits (115), Expect = 4e-05
Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Frame = +3
Query: 96 VDEHKLRIFYEKRMGAEVEADQL-GDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLM 272
VD++K ++G EA+QL G K L++ GG+D GFPM+ V+ ++ ++L+
Sbjct: 121 VDQNKATNLVGLKIGDVFEANQLIGLPVK---LKITGGSDNSGFPMRFDVIGAAKRKILL 177
Query: 273 SKGHSCYRPRRDGERKRKSVRG 338
S G + P +GER+RK++RG
Sbjct: 178 S-GPPGFYPNENGERRRKTIRG 198
>UniRef50_A7IAP8 Cluster: Ribosomal protein S6e; n=2; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S6e -
Methanoregula boonei (strain 6A8)
Length = 143
Score = 49.6 bits (113), Expect = 6e-05
Identities = 26/69 (37%), Positives = 43/69 (62%)
Frame = +3
Query: 129 KRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRD 308
K++G EV+A LG GY + + GG+D+ G P ++ + R +LL+++G + P +
Sbjct: 32 KKIGDEVDAGPLG--LAGYKILITGGSDQTGTPARKSLPGAGRRKLLLAEGVG-FHPVME 88
Query: 309 GERKRKSVR 335
GERKRK +R
Sbjct: 89 GERKRKMIR 97
>UniRef50_A2BJZ7 Cluster: 30S ribosomal protein S6e; n=2;
Desulfurococcales|Rep: 30S ribosomal protein S6e -
Hyperthermus butylicus (strain DSM 5456 / JCM 9403)
Length = 217
Score = 49.2 bits (112), Expect = 9e-05
Identities = 24/53 (45%), Positives = 33/53 (62%)
Frame = +3
Query: 180 GYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRG 338
GY L + GG+D GFPM + + R+L+S G + PR GER+RK+VRG
Sbjct: 146 GYKLLIRGGSDNSGFPMLPSIPGPVKKRVLLS-GPPGFHPREKGERRRKTVRG 197
>UniRef50_Q6LXY7 Cluster: 30S ribosomal protein S6e; n=4;
Archaea|Rep: 30S ribosomal protein S6e - Methanococcus
maripaludis
Length = 124
Score = 49.2 bits (112), Expect = 9e-05
Identities = 24/78 (30%), Positives = 47/78 (60%)
Frame = +3
Query: 129 KRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRD 308
K++G E+ + E +GY L++ GG+D+ GF M+ + ++R+L+ +G Y +
Sbjct: 28 KKIGDEISGSIV--ELEGYKLKITGGSDRCGFAMRHDIHGAMKMRVLLKEGPG-YNVKEK 84
Query: 309 GERKRKSVRGCIVDANLS 362
G R+RKS+RG + +++
Sbjct: 85 GLRRRKSLRGNTISKDIT 102
>UniRef50_Q9Y9B6 Cluster: 30S ribosomal protein S6e; n=1; Aeropyrum
pernix|Rep: 30S ribosomal protein S6e - Aeropyrum pernix
Length = 235
Score = 48.0 bits (109), Expect = 2e-04
Identities = 23/56 (41%), Positives = 34/56 (60%)
Frame = +3
Query: 180 GYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIV 347
G ++ GG D G PM GV + R ++L++ G + PR GER+RKSVRG ++
Sbjct: 155 GLKFKIRGGTDATGIPMHPGVPGSGRYKVLLA-GPPGFHPRERGERRRKSVRGRMI 209
>UniRef50_A0RYX5 Cluster: Ribosomal protein S6E; n=1; Cenarchaeum
symbiosum|Rep: Ribosomal protein S6E - Cenarchaeum
symbiosum
Length = 133
Score = 45.2 bits (102), Expect = 0.001
Identities = 28/68 (41%), Positives = 39/68 (57%)
Frame = +3
Query: 135 MGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGE 314
+G+E +A LG E K +R+ GG+DK G PM+ V +R +L+S+G R G
Sbjct: 39 IGSEADATALGLEGK---IRITGGSDKSGVPMRPDVHGPARKYVLLSRGVG-LRDAERGG 94
Query: 315 RKRKSVRG 338
R RK VRG
Sbjct: 95 RTRKLVRG 102
>UniRef50_UPI0000DC1AEC Cluster: UPI0000DC1AEC related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC1AEC UniRef100 entry -
Rattus norvegicus
Length = 227
Score = 44.0 bits (99), Expect = 0.003
Identities = 36/101 (35%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Frame = +3
Query: 45 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGF 224
KLN+S+ Q L EV + KLR FYEK M E+ + +E N + F
Sbjct: 2 KLNISFLLIVYQILTEVDGKCKLRAFYEKCMTTEITVNFSCEE-----------NADKIF 50
Query: 225 PMKQGVLTNSRVRLLMSKGHS-CYRPRRDGERKRKSVRGCI 344
MKQ VL + RV LL++ HS Y+P R E S++ +
Sbjct: 51 SMKQEVLIHFRVHLLLNNLHSYIYKPLRTREMNYTSLQDAV 91
Score = 34.7 bits (76), Expect = 2.0
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Frame = +1
Query: 319 NVNQFVDVLLTPISRVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDD 498
N D + PIS +L +VI+ G ++IPG T +R PKR +I+ F++S
Sbjct: 83 NYTSLQDAVKLPIS-LLNMVIIINGRKDIPGQT-----KRWAPKRWRRIQS-FSVS---- 131
Query: 499 VRRYVVKRVLPAK--EGKENAKPRHKAPKIQ 585
+K VL K + K++ KPR K K+Q
Sbjct: 132 -----LKTVLSTKKPQNKDSKKPRPKTHKVQ 157
>UniRef50_Q8ZX25 Cluster: 30S ribosomal protein S6e; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S6e -
Pyrobaculum aerophilum
Length = 148
Score = 44.0 bits (99), Expect = 0.003
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Frame = +3
Query: 45 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEW---KGYVLRVAGGNDK 215
KL +S P +G + FE+ D R F ++G E++ L D KG +R+ GG+
Sbjct: 5 KLVLSDPMSGKARQFEIKDPLAQR-FIGLKIGDELDGVILKDLIELPKGAKIRITGGSGI 63
Query: 216 QGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRG 338
+G PM GV + + +++ G Y P + G +K+K VRG
Sbjct: 64 EGAPMHPGVPGPVK-KYILADGPPGYWPPKKGMKKKKLVRG 103
>UniRef50_Q01CM6 Cluster: Chromosome 03 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 03 contig 1, DNA
sequence - Ostreococcus tauri
Length = 211
Score = 42.3 bits (95), Expect = 0.010
Identities = 22/53 (41%), Positives = 34/53 (64%)
Frame = -3
Query: 326 FTFSLSIAARSVT*VAL*HQKTNTAVCQDALFHRESLLVVAASDTKYIALPFI 168
FT + ++AA + AL H++ +T V Q AL H E+LLVV D + ++LPF+
Sbjct: 161 FTLASAVAAEAAR--ALGHEQEHTLVRQHALLHAEALLVVTTHDLEDVSLPFL 211
>UniRef50_Q978W7 Cluster: 30S ribosomal protein S6e; n=5;
Thermoplasmatales|Rep: 30S ribosomal protein S6e -
Thermoplasma volcanium
Length = 128
Score = 41.9 bits (94), Expect = 0.013
Identities = 29/103 (28%), Positives = 57/103 (55%)
Frame = +3
Query: 54 VSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMK 233
++ P TG E+ E ++ +++G EV D + + GY +++ GG+ GF M+
Sbjct: 8 IADPKTGKTYKREIPSE-RMSSLIGRKIGEEV--DGVFFDLVGYKMKITGGSSVDGFAMR 64
Query: 234 QGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLS 362
+ T + ++L+ K S YR ++G RKR + RG I+ ++++
Sbjct: 65 PDLQTQGKKQILV-KYTSGYR-GKNGIRKRITARGSIIGSDIT 105
>UniRef50_A7DQN0 Cluster: Ribosomal protein S6e; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein S6e
- Candidatus Nitrosopumilus maritimus SCM1
Length = 137
Score = 40.7 bits (91), Expect = 0.030
Identities = 25/75 (33%), Positives = 40/75 (53%)
Frame = +3
Query: 135 MGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGE 314
+G E +A +G K L++ GG+DK G PM+ + +R +L+SKG + G+
Sbjct: 33 LGQETDASVVGLNGK---LKLTGGSDKSGVPMRNDIHGAARKYVLLSKGVG-LQDAEKGQ 88
Query: 315 RKRKSVRGCIVDANL 359
R RK +RG V +
Sbjct: 89 RVRKLMRGNTVSEEI 103
>UniRef50_Q8PU79 Cluster: 30S ribosomal protein S6e; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S6e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 136
Score = 40.7 bits (91), Expect = 0.030
Identities = 21/53 (39%), Positives = 31/53 (58%)
Frame = +3
Query: 180 GYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRG 338
GY +++ GG D GF MK + R R+L + G Y P+ G+R+RK +RG
Sbjct: 47 GYKVQITGGCDGSGFVMKPDLPGPRRQRILTATGVG-YVPKLPGQRRRKMMRG 98
>UniRef50_Q74MJ5 Cluster: 30S ribosomal protein S6e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S6e -
Nanoarchaeum equitans
Length = 126
Score = 39.5 bits (88), Expect = 0.069
Identities = 23/69 (33%), Positives = 40/69 (57%)
Frame = +3
Query: 36 AVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDK 215
+V+K+ VS P +G E + L Y K++G ++ ++G + GY L++ GG+D
Sbjct: 5 SVVKIVVSDPKSGKAIQIETKEPQWL---YGKKIGDTIDGSKIGLD--GYELKITGGSDI 59
Query: 216 QGFPMKQGV 242
GFPM++ V
Sbjct: 60 AGFPMRKEV 68
>UniRef50_Q4V5Z5 Cluster: IP07914p; n=1; Drosophila
melanogaster|Rep: IP07914p - Drosophila melanogaster
(Fruit fly)
Length = 147
Score = 36.7 bits (81), Expect = 0.49
Identities = 20/38 (52%), Positives = 26/38 (68%)
Frame = +3
Query: 255 RVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSGL 368
R+RLL K HSC+ PR + RK K+VR V+AN+S L
Sbjct: 19 RLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSAL 55
Score = 34.3 bits (75), Expect = 2.6
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = +1
Query: 430 PRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPK 579
P RLGP R+S I K++ L +EDD V+P K + + K R A K
Sbjct: 66 PCRLGPVRSSNISKIYYLCEEDD-------EVIPVKLQRRHQKKRQNATK 108
>UniRef50_A6L045 Cluster: Putative uncharacterized protein; n=1;
Bacteroides vulgatus ATCC 8482|Rep: Putative
uncharacterized protein - Bacteroides vulgatus (strain
ATCC 8482 / DSM 1447 / NCTC 11154)
Length = 541
Score = 35.5 bits (78), Expect = 1.1
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +1
Query: 346 LTPISRVLALVI-VRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV 513
LT R LA ++ V +EI LT GNVP+ + R ++RK NLS EDD+ Y+
Sbjct: 484 LTQGERYLATLLRVNLSTKEISMLT-GNVPKTINMNRY-RLRKSLNLSSEDDLTDYL 538
>UniRef50_Q87BM0 Cluster: Putative uncharacterized protein; n=1;
Xylella fastidiosa Temecula1|Rep: Putative
uncharacterized protein - Xylella fastidiosa (strain
Temecula1 / ATCC 700964)
Length = 109
Score = 35.1 bits (77), Expect = 1.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 179 GLCTSCRWRQRQARIPDETGRPDKQPCSSSDVKG 280
G C RWR ++ + DE G + PC+ DV+G
Sbjct: 17 GACCMARWRCQEINVTDEVGYGMRLPCTPHDVRG 50
>UniRef50_A4JQL7 Cluster: Putative uncharacterized protein; n=1;
Burkholderia vietnamiensis G4|Rep: Putative
uncharacterized protein - Burkholderia vietnamiensis
(strain G4 / LMG 22486) (Burkholderiacepacia (strain
R1808))
Length = 109
Score = 34.7 bits (76), Expect = 2.0
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +1
Query: 286 HVTDRA-AMERENVNQFVDVLLTPISRVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASK 462
+V +RA ++E + +Q ++VLL I+R + + R E+ G P RLG K +
Sbjct: 7 NVGERAGSIESGDCSQRLEVLLDSIARTCGIAVERARPVEVDD--GGPAPIRLGNKTIKQ 64
Query: 463 IRKLFNLSKEDDVRRY 510
IRKL ++ D V Y
Sbjct: 65 IRKLRHVLAIDTVLNY 80
>UniRef50_O86476 Cluster: Clumping factor B precursor; n=31;
Staphylococcus aureus|Rep: Clumping factor B precursor -
Staphylococcus aureus
Length = 913
Score = 33.5 bits (73), Expect = 4.5
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +3
Query: 45 KLNVSYPAT-GCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 221
KL+ SY A L EV D+ K RI+YE A ++ GD K YV+ V G D G
Sbjct: 441 KLSDSYYADPNDSNLKEVTDQFKNRIYYEHPNVASIK---FGDITKTYVVLVEGHYDNTG 497
Query: 222 FPMKQGVL 245
+K V+
Sbjct: 498 KNLKTQVI 505
>UniRef50_Q6N427 Cluster: Phytoene dehydrogenase-related protein;
n=24; Bacteria|Rep: Phytoene dehydrogenase-related
protein - Rhodopseudomonas palustris
Length = 590
Score = 33.1 bits (72), Expect = 6.0
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = -2
Query: 246 SGRPVSSGILACRCRQ-RHEVHSPSIHRLTDQPL 148
SGRPV+SGILA C Q +++ +P HR + P+
Sbjct: 22 SGRPVTSGILASLCEQWQNQPRTPLSHRSGNLPM 55
>UniRef50_A0X1E3 Cluster: Diguanylate cyclase; n=2; Shewanella|Rep:
Diguanylate cyclase - Shewanella pealeana ATCC 700345
Length = 684
Score = 32.7 bits (71), Expect = 7.9
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = -2
Query: 531 WEHAFDDITTYIIFFAKVEQLTDFGSTFGT*TAGYISISQSRNFLGTLAHNNKSQDPRD- 355
WE A D+I + K + DFG F AG + ++ + N++ + H ++ +D
Sbjct: 302 WEKARDNIEQQFLLAVKASEFNDFG-FFAHLNAGRVELA-THNYVDAIEHLEQAISLKDT 359
Query: 354 WRQQYIHELIYVF 316
R+QY Y+F
Sbjct: 360 TREQYFITSSYLF 372
>UniRef50_A2F5X7 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 1146
Score = 32.7 bits (71), Expect = 7.9
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 418 DGNVPRRLGPKRASKIRK-LFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQR 588
D + + PK+ S +K + + S EDD K++L + + E KPR K+P+ +R
Sbjct: 1012 DSSDEEEIKPKQKSPQKKPILSSSSEDDAIPPPKKKLLDSSDDDEEIKPRQKSPQKKR 1069
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 662,384,031
Number of Sequences: 1657284
Number of extensions: 14085926
Number of successful extensions: 42365
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 40791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42322
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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