Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_M22
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   163   3e-41
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   163   3e-41
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    32   0.083
SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyce...    27   3.1  
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    26   4.1  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    26   5.5  
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc...    25   7.2  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    25   7.2  
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    25   9.5  

>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  163 bits (395), Expect = 3e-41
 Identities = 75/117 (64%), Positives = 87/117 (74%)
 Frame = +3

Query: 42  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 221
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 222 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSGLGSCYCAQG 392
           FPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+ L      QG
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQG 117



 Score =  114 bits (274), Expect = 1e-26
 Identities = 57/80 (71%), Positives = 68/80 (85%), Gaps = 1/80 (1%)
 Frame = +1

Query: 364 VLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLPAKE 540
           VLAL I+++G Q+IPGLTD  VP+RLGPKRASKIR+ FNLSKEDDVR++V++R V+P KE
Sbjct: 108 VLALAIIKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKE 167

Query: 541 GKENAKPRHKAPKIQRLVTP 600
           GK   KP  KAPKIQRLVTP
Sbjct: 168 GK---KPYTKAPKIQRLVTP 184


>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  163 bits (395), Expect = 3e-41
 Identities = 75/117 (64%), Positives = 87/117 (74%)
 Frame = +3

Query: 42  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 221
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 222 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSGLGSCYCAQG 392
           FPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+ L      QG
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQG 117



 Score =  114 bits (275), Expect = 9e-27
 Identities = 58/80 (72%), Positives = 68/80 (85%), Gaps = 1/80 (1%)
 Frame = +1

Query: 364 VLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLPAKE 540
           VLAL IV++G Q+IPGLTD  VP+RLGPKRASKIR+ FNLSKEDDVR++V++R V+P KE
Sbjct: 108 VLALAIVKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKE 167

Query: 541 GKENAKPRHKAPKIQRLVTP 600
           GK   KP  KAPKIQRLVTP
Sbjct: 168 GK---KPYTKAPKIQRLVTP 184


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 31.9 bits (69), Expect = 0.083
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -2

Query: 423 SISQSRNFLGTLAHNNKSQDPRDWRQQ 343
           SIS S++F  +L++ N+S  P DW QQ
Sbjct: 175 SISNSKSFGTSLSYYNRSSKPSDWNQQ 201


>SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 445

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -2

Query: 111 ACARPPLRTTSGIPLPGTKRLTS*LRSIPWNVSHEKA 1
           A   PP  T S IP  GT+ L   +   P NV   +A
Sbjct: 367 AAVNPPATTVSFIPADGTEPLKLLVNGEPQNVDETRA 403


>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 423 SISQSRNFLGTLAHNNKSQDPRDWRQQYIHELIYVFSLHRGAV 295
           +I   +N L   A  +  Q+    RQ++++ELI  F L+ G V
Sbjct: 240 AIQMEKNKLFEQATKSPKQEELKQRQEFLNELISSFLLNNGFV 282


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 482 LAKKMMYVVMSSNACSQLRKEKKTLNPDIRHL 577
           LAK ++     +N  +QLR +KK L  D++ L
Sbjct: 228 LAKMLVIYREKTNVFNQLRADKKKLKKDLKDL 259


>SPAC6B12.05c |||chromatin remodeling complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 264 LLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSGL 368
           ++ SK +S  +P+  G  KRK+ R  +VD +   L
Sbjct: 97  VVTSKKNSRSKPKNGGASKRKASRRTVVDEDSENL 131


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -2

Query: 498 IIFFAKVEQLTDFGSTFGT*TAGYISISQSRNFLGTLAHNNKSQD 364
           +I + K E +   GSTFG   +G       R++   L H+N  QD
Sbjct: 98  VIIWHKEEAIPGLGSTFG---SGEKHTENWRSYRRLLGHDNDIQD 139


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 62  PGNGMPEVVRSGGRAQASYLLR 127
           PG+G+P +V    R  AS +LR
Sbjct: 867 PGSGLPLIVNENTRLSASAMLR 888


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,659,434
Number of Sequences: 5004
Number of extensions: 55189
Number of successful extensions: 137
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)