BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fprWP01_F_M22 (655 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch... 163 3e-41 SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo... 163 3e-41 SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 32 0.083 SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyce... 27 3.1 SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ... 26 4.1 SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 26 5.5 SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 25 7.2 SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 25 7.2 SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 25 9.5 >SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosaccharomyces pombe|chr 1|||Manual Length = 239 Score = 163 bits (395), Expect = 3e-41 Identities = 75/117 (64%), Positives = 87/117 (74%) Frame = +3 Query: 42 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 221 MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV D +G E+ GYV ++ GGNDKQG Sbjct: 1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60 Query: 222 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSGLGSCYCAQG 392 FPM QGVL RVRLL+ GH CYRPRRDGERKRKSVRGCIV +L+ L QG Sbjct: 61 FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQG 117 Score = 114 bits (274), Expect = 1e-26 Identities = 57/80 (71%), Positives = 68/80 (85%), Gaps = 1/80 (1%) Frame = +1 Query: 364 VLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLPAKE 540 VLAL I+++G Q+IPGLTD VP+RLGPKRASKIR+ FNLSKEDDVR++V++R V+P KE Sbjct: 108 VLALAIIKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKE 167 Query: 541 GKENAKPRHKAPKIQRLVTP 600 GK KP KAPKIQRLVTP Sbjct: 168 GK---KPYTKAPKIQRLVTP 184 >SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizosaccharomyces pombe|chr 1|||Manual Length = 239 Score = 163 bits (395), Expect = 3e-41 Identities = 75/117 (64%), Positives = 87/117 (74%) Frame = +3 Query: 42 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 221 MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV D +G E+ GYV ++ GGNDKQG Sbjct: 1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60 Query: 222 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSGLGSCYCAQG 392 FPM QGVL RVRLL+ GH CYRPRRDGERKRKSVRGCIV +L+ L QG Sbjct: 61 FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQG 117 Score = 114 bits (275), Expect = 9e-27 Identities = 58/80 (72%), Positives = 68/80 (85%), Gaps = 1/80 (1%) Frame = +1 Query: 364 VLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLPAKE 540 VLAL IV++G Q+IPGLTD VP+RLGPKRASKIR+ FNLSKEDDVR++V++R V+P KE Sbjct: 108 VLALAIVKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKE 167 Query: 541 GKENAKPRHKAPKIQRLVTP 600 GK KP KAPKIQRLVTP Sbjct: 168 GK---KPYTKAPKIQRLVTP 184 >SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1087 Score = 31.9 bits (69), Expect = 0.083 Identities = 13/27 (48%), Positives = 19/27 (70%) Frame = -2 Query: 423 SISQSRNFLGTLAHNNKSQDPRDWRQQ 343 SIS S++F +L++ N+S P DW QQ Sbjct: 175 SISNSKSFGTSLSYYNRSSKPSDWNQQ 201 >SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyces pombe|chr 2|||Manual Length = 445 Score = 26.6 bits (56), Expect = 3.1 Identities = 14/37 (37%), Positives = 17/37 (45%) Frame = -2 Query: 111 ACARPPLRTTSGIPLPGTKRLTS*LRSIPWNVSHEKA 1 A PP T S IP GT+ L + P NV +A Sbjct: 367 AAVNPPATTVSFIPADGTEPLKLLVNGEPQNVDETRA 403 >SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces pombe|chr 3|||Manual Length = 486 Score = 26.2 bits (55), Expect = 4.1 Identities = 14/43 (32%), Positives = 23/43 (53%) Frame = -2 Query: 423 SISQSRNFLGTLAHNNKSQDPRDWRQQYIHELIYVFSLHRGAV 295 +I +N L A + Q+ RQ++++ELI F L+ G V Sbjct: 240 AIQMEKNKLFEQATKSPKQEELKQRQEFLNELISSFLLNNGFV 282 >SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1065 Score = 25.8 bits (54), Expect = 5.5 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = +2 Query: 482 LAKKMMYVVMSSNACSQLRKEKKTLNPDIRHL 577 LAK ++ +N +QLR +KK L D++ L Sbjct: 228 LAKMLVIYREKTNVFNQLRADKKKLKKDLKDL 259 >SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosaccharomyces pombe|chr 1|||Manual Length = 295 Score = 25.4 bits (53), Expect = 7.2 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = +3 Query: 264 LLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSGL 368 ++ SK +S +P+ G KRK+ R +VD + L Sbjct: 97 VVTSKKNSRSKPKNGGASKRKASRRTVVDEDSENL 131 >SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces pombe|chr 2|||Manual Length = 932 Score = 25.4 bits (53), Expect = 7.2 Identities = 15/45 (33%), Positives = 22/45 (48%) Frame = -2 Query: 498 IIFFAKVEQLTDFGSTFGT*TAGYISISQSRNFLGTLAHNNKSQD 364 +I + K E + GSTFG +G R++ L H+N QD Sbjct: 98 VIIWHKEEAIPGLGSTFG---SGEKHTENWRSYRRLLGHDNDIQD 139 >SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosaccharomyces pombe|chr 1|||Manual Length = 962 Score = 25.0 bits (52), Expect = 9.5 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = +2 Query: 62 PGNGMPEVVRSGGRAQASYLLR 127 PG+G+P +V R AS +LR Sbjct: 867 PGSGLPLIVNENTRLSASAMLR 888 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,659,434 Number of Sequences: 5004 Number of extensions: 55189 Number of successful extensions: 137 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 129 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 135 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 295793106 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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