Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_M22
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 148 3e-36
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 145 2e-35
12_01_0221 + 1671231-1671349,1671613-1671745,1672011-1672190,167... 29 2.4
11_01_0220 + 1717861-1717979,1718149-1718281,1718544-1718723,171... 29 2.4
10_07_0139 + 13327851-13327880,13327999-13329049,13329089-133296... 29 2.4
04_03_0919 + 20820010-20821707 28 7.5
01_01_1165 - 9267891-9268145,9268395-9268510,9268991-9269127,926... 28 7.5
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201... 27 9.9
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 148 bits (359), Expect = 3e-36
Identities = 68/109 (62%), Positives = 84/109 (77%), Gaps = 2/109 (1%)
Frame = +3
Query: 42 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 221
MK N++ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 222 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLS 362
FPMKQGVLT+ RVRLL+ +G C+R RRDGER+RKSVRGCIV +LS
Sbjct: 61 FPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLS 109
Score = 94.7 bits (225), Expect = 6e-20
Identities = 50/81 (61%), Positives = 60/81 (74%), Gaps = 2/81 (2%)
Frame = +1
Query: 364 VLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAK 537
V+ LVIV+KG ++PGLTD PR GPKRASKIRKLFNL+K+DDVR+YV +R K
Sbjct: 110 VINLVIVKKGDNDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFTTK 169
Query: 538 EGKENAKPRHKAPKIQRLVTP 600
GK+ + KAPKIQRLVTP
Sbjct: 170 NGKKVS----KAPKIQRLVTP 186
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 145 bits (352), Expect = 2e-35
Identities = 67/109 (61%), Positives = 83/109 (76%), Gaps = 2/109 (1%)
Frame = +3
Query: 42 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 221
MK N++ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 222 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLS 362
FPMKQGVLT RVRLL+ +G C+R RRDGER+RKSVRGCIV +LS
Sbjct: 61 FPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLS 109
Score = 96.3 bits (229), Expect = 2e-20
Identities = 51/81 (62%), Positives = 60/81 (74%), Gaps = 2/81 (2%)
Frame = +1
Query: 364 VLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAK 537
V+ LVIV+KG ++PGLTD PR GPKRASKIRKLFNLSK+DDVR+YV +R K
Sbjct: 110 VINLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTK 169
Query: 538 EGKENAKPRHKAPKIQRLVTP 600
GK+ + KAPKIQRLVTP
Sbjct: 170 NGKKVS----KAPKIQRLVTP 186
>12_01_0221 +
1671231-1671349,1671613-1671745,1672011-1672190,
1672632-1672712,1672850-1673013,1673109-1673245,
1673492-1673607,1673725-1673958
Length = 387
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 342 IVDANLSGLGSCYCAQGCPGN 404
IVD+++SGLG C A+G GN
Sbjct: 315 IVDSSVSGLGGCPYAKGATGN 335
>11_01_0220 +
1717861-1717979,1718149-1718281,1718544-1718723,
1719046-1719126,1719259-1719422,1719518-1719654,
1719900-1720015,1720134-1720367
Length = 387
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 342 IVDANLSGLGSCYCAQGCPGN 404
IVD+++SGLG C A+G GN
Sbjct: 315 IVDSSVSGLGGCPYAKGATGN 335
>10_07_0139 +
13327851-13327880,13327999-13329049,13329089-13329648,
13329757-13329904,13330935-13331024,13331148-13331208,
13331301-13331450,13331571-13331629,13332148-13332282,
13333028-13333119,13333210-13333278
Length = 814
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/53 (24%), Positives = 32/53 (60%)
Frame = +1
Query: 436 RLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLV 594
++ PK+A ++ + + +DD+ R V + +P+++ + A+ ++PK +R V
Sbjct: 325 KVEPKKAHCSDRISHKTTQDDMERKVPSKYIPSEKKGKTAESCSRSPKRERRV 377
>04_03_0919 + 20820010-20821707
Length = 565
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 270 MSKGHSCYRPRRDGERKRKSVRGCIVDANLSG 365
M +S Y P + + K GC+VDANL G
Sbjct: 476 MDGDYSFYFPMQVARKLLKGEIGCLVDANLEG 507
>01_01_1165 - 9267891-9268145,9268395-9268510,9268991-9269127,
9269645-9269808,9269892-9269972,9270783-9270962,
9271489-9271929,9273234-9273344,9274355-9274463,
9274618-9274643,9274823-9274903,9275013-9275211,
9275374-9275449,9275553-9275769,9276117-9276155,
9276684-9276783,9276962-9277084,9277171-9277895
Length = 1059
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 342 IVDANLSGLGSCYCAQGCPGN 404
+VD++++GLG C A+G GN
Sbjct: 980 VVDSSVAGLGGCPYAKGASGN 1000
>01_07_0254 +
42318181-42319471,42319581-42319792,42319909-42320132,
42320232-42321009
Length = 834
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 78 QKLF-EVVDEHKLRIFYEKRMGAEVEADQLG 167
+KL+ E+ DE KLRI YEK+ D+ G
Sbjct: 494 KKLYQEIKDEEKLRILYEKKYRRLKSLDERG 524
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,557,967
Number of Sequences: 37544
Number of extensions: 422699
Number of successful extensions: 1220
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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