Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_M22
(655 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0) 137 6e-33
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30) 38 0.005
SB_6097| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.7) 31 0.62
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.82
SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8) 29 4.4
SB_54650| Best HMM Match : IncA (HMM E-Value=0.84) 29 4.4
SB_41444| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_25734| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_27725| Best HMM Match : RVT_1 (HMM E-Value=1.9e-19) 28 7.6
SB_5302| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_4034| Best HMM Match : Exo_endo_phos (HMM E-Value=9.7e-06) 28 7.6
SB_2184| Best HMM Match : AMP-binding (HMM E-Value=8.5e-06) 28 7.6
SB_32833| Best HMM Match : RVT_1 (HMM E-Value=2) 28 7.6
SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1) 28 7.6
SB_4111| Best HMM Match : HMGL-like (HMM E-Value=2.4e-12) 28 7.6
>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
Length = 212
Score = 137 bits (332), Expect = 6e-33
Identities = 61/83 (73%), Positives = 68/83 (81%)
Frame = +3
Query: 144 EVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKR 323
EV + LGDEWKGYV R+ GGNDKQGFPMKQG++TN RVRLL+SKGHSCYRPRR GERKR
Sbjct: 2 EVSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKR 61
Query: 324 KSVRGCIVDANLSGLGSCYCAQG 392
KSVRGCIVD+ LS L +G
Sbjct: 62 KSVRGCIVDSQLSVLSLVIVKKG 84
Score = 121 bits (291), Expect = 6e-28
Identities = 58/79 (73%), Positives = 67/79 (84%)
Frame = +1
Query: 364 VLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEG 543
VL+LVIV+KG Q+IPGLTD +PRRLGPKR KIRK+FNLSKEDDVR+YV++R LP KEG
Sbjct: 75 VLSLVIVKKGEQDIPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVRQYVIRRPLPEKEG 134
Query: 544 KENAKPRHKAPKIQRLVTP 600
K K + KAPKIQRLVTP
Sbjct: 135 K---KAKSKAPKIQRLVTP 150
>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
Length = 796
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = -3
Query: 284 VAL*HQKTNTAVCQDALFHRESLLVVAASDTKYIALPFIA*LISLYFGAHALFVK 120
V L Q+ + A+ D L H +SL V+ SD + ++LP I + Y H L ++
Sbjct: 252 VTLGEQEADAAIGHDPLLHGKSLFVITTSDPEDVSLPLIPQALPRYLHGHTLVIE 306
>SB_6097| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.7)
Length = 325
Score = 31.5 bits (68), Expect = 0.62
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Frame = -2
Query: 432 GYISISQSRNFLGTLAHNNKSQDPRDWRQQYIHELIYVFSLHR-GAVCNMSG-PLTSEDE 259
GY+SI +RN+ G L +K R+W ++ +V+ G C + G P
Sbjct: 21 GYLSIPPARNYCGAL--KDKGPCVRNWTPNELNCGGFVYQWREAGGKCGVCGDPYGKTQR 78
Query: 258 HGCLSGRPVSSGILACRCRQRHEVHSPSI 172
H G + G++ R R + + H P I
Sbjct: 79 H--TEGGEFAKGVITGRRRFKLKEHLPKI 105
>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5834
Score = 31.1 bits (67), Expect = 0.82
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Frame = +3
Query: 240 VLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSGLGSCYCAQGCPG---NSW 410
+ NSR + G +C P G R S+ CI D++ GL CA+ CPG N
Sbjct: 2443 IFRNSRYMTYI--GTNCEVPCFHGYRSAGSIIKCICDSSFWGLD---CARACPGGPFNQC 2497
Query: 411 ID*WKCTPPSRSQTC 455
CT + S C
Sbjct: 2498 FGQGTCTSSTGSCAC 2512
>SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)
Length = 1365
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +3
Query: 150 EADQLGDEWKGYVL--RVAGGNDKQGFPMK 233
E D+ G EW+G+V G D QG+ MK
Sbjct: 815 EEDRTGQEWEGHVCDKEPEGKRDNQGYKMK 844
>SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)
Length = 291
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 421 GNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVK 519
G+ + GP + SKI K+ ++DDV+ VVK
Sbjct: 221 GSEAAKTGPNKLSKIDKVILAVEDDDVQEIVVK 253
>SB_41444| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +1
Query: 469 KLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQR 588
+ F+++KEDD+ Y++ L + K NA ++ P+ R
Sbjct: 137 RAFDVTKEDDITMYIIITPLFMRARKNNAMEYNQKPRDPR 176
>SB_25734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1938
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 419 SVNPGISWAPLRTITRAKTREIGVNNTSTN*FTFSLS 309
SV + P T R +T E GVN+T N TF++S
Sbjct: 964 SVRNHVFNGPFSTTRRVQTDEDGVNHTEINSTTFNIS 1000
>SB_27725| Best HMM Match : RVT_1 (HMM E-Value=1.9e-19)
Length = 262
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -2
Query: 570 LMSGFSVFFSFLSWEHAFDDITTYIIFFA 484
L G S+FF+F+ E AFD + II++A
Sbjct: 91 LAKGKSLFFAFVDLEKAFDRVPRDIIWWA 119
>SB_5302| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -2
Query: 570 LMSGFSVFFSFLSWEHAFDDITTYIIFFA 484
L G S+FF+F+ E AFD + I+++A
Sbjct: 628 LAKGKSLFFAFVDLEKAFDRVPRVILWWA 656
>SB_4034| Best HMM Match : Exo_endo_phos (HMM E-Value=9.7e-06)
Length = 609
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -2
Query: 570 LMSGFSVFFSFLSWEHAFDDITTYIIFFA 484
L G S+FF+F+ E AFD + I+++A
Sbjct: 545 LAKGKSLFFAFVDLEKAFDRVPRVILWWA 573
>SB_2184| Best HMM Match : AMP-binding (HMM E-Value=8.5e-06)
Length = 757
Score = 27.9 bits (59), Expect = 7.6
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Frame = +1
Query: 388 KGAQEIPGLTDGNV----PRRLGPK---RASKIRKLFNLSKEDDVRRYVVKRVLPAKEGK 546
+GA+++P L +G V P + G K R++ +++L E DVR + RV ++
Sbjct: 267 RGARDVPPLEEGGVVRMRPFKFGKKHWDRSTVVKRLGEYEVETDVRTHRRHRVGLKEQNL 326
Query: 547 ENAKPRHKAP 576
A P+ P
Sbjct: 327 PPATPQEADP 336
>SB_32833| Best HMM Match : RVT_1 (HMM E-Value=2)
Length = 317
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -2
Query: 570 LMSGFSVFFSFLSWEHAFDDITTYIIFFA 484
L G S+FF+F+ E AFD + I+++A
Sbjct: 196 LAKGKSLFFAFVDLEKAFDRVPRVILWWA 224
>SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1)
Length = 1101
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 454 ASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPR 564
A ++ + + DDV+ ++K ++P KEG E+ P+
Sbjct: 22 AGLVQNILDEDIPDDVKHRLLKPLVPEKEGPESLDPK 58
>SB_4111| Best HMM Match : HMGL-like (HMM E-Value=2.4e-12)
Length = 340
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 345 VDANLSGLGSCYCAQGCPGN 404
+DA++SGLG C A G GN
Sbjct: 214 IDASVSGLGGCPYAAGASGN 233
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,881,706
Number of Sequences: 59808
Number of extensions: 466398
Number of successful extensions: 1367
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1366
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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