Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_M22
(655 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso... 145 2e-35
At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B) 144 5e-35
At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF051... 30 1.2
At1g21740.1 68414.m02721 expressed protein contains Pfam domains... 30 1.5
At1g17910.1 68414.m02217 wall-associated kinase, putative contai... 29 2.0
At2g26800.2 68415.m03215 hydroxymethylglutaryl-CoA lyase, putati... 29 3.6
At2g26800.1 68415.m03214 hydroxymethylglutaryl-CoA lyase, putati... 29 3.6
At1g67280.1 68414.m07657 lactoylglutathione lyase, putative / gl... 29 3.6
At2g16390.1 68415.m01876 SNF2 domain-containing protein / helica... 28 6.2
>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
protein S6, Arabidopsis thaliana, PID:g2662469
Length = 250
Score = 145 bits (352), Expect = 2e-35
Identities = 70/119 (58%), Positives = 85/119 (71%), Gaps = 2/119 (1%)
Frame = +3
Query: 42 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 221
MK NV+ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQG 60
Query: 222 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSGLGSCYCAQG 392
FPMKQGVLT RVRLL+ +G C+R RR GER+RKSVRGCIV +LS L +G
Sbjct: 61 FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKG 119
Score = 97.9 bits (233), Expect = 5e-21
Identities = 54/88 (61%), Positives = 63/88 (71%), Gaps = 2/88 (2%)
Frame = +1
Query: 343 LLTPISRVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--V 516
+++P VL LVIV+KG ++PGLTD PR GPKRASKIRKLFNL KEDDVR YV
Sbjct: 103 IVSPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTY 162
Query: 517 KRVLPAKEGKENAKPRHKAPKIQRLVTP 600
+R K+GKE + KAPKIQRLVTP
Sbjct: 163 RRKFTNKKGKEVS----KAPKIQRLVTP 186
>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
Length = 249
Score = 144 bits (349), Expect = 5e-35
Identities = 69/119 (57%), Positives = 85/119 (71%), Gaps = 2/119 (1%)
Frame = +3
Query: 42 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 221
MK NV+ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 222 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSGLGSCYCAQG 392
FPMKQGVLT RVRLL+ +G C+R RR GER+RKSVRGCIV +LS L +G
Sbjct: 61 FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKG 119
Score = 98.7 bits (235), Expect = 3e-21
Identities = 53/88 (60%), Positives = 64/88 (72%), Gaps = 2/88 (2%)
Frame = +1
Query: 343 LLTPISRVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--V 516
+++P VL LVIV+KG ++PGLTD PR GPKRASKIRKLFNL KEDDVR+YV
Sbjct: 103 IVSPDLSVLNLVIVKKGVSDLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTY 162
Query: 517 KRVLPAKEGKENAKPRHKAPKIQRLVTP 600
+R K+GK+ + KAPKIQRLVTP
Sbjct: 163 RRTFTNKKGKKVS----KAPKIQRLVTP 186
>At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF05178:
Krr1 family
Length = 638
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +1
Query: 412 LTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRV--LPAKEGKENAK 558
+ +G+V ++ ++A + K + KEDDVR+ +KR+ + KE KE K
Sbjct: 288 VVEGSVRKKDNARKAQRKNKDERMKKEDDVRKEELKRLKNVKKKEIKEKMK 338
>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 953
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 27 GLTAVMKLNVSYPATGCQKLF-EVVDEHKLRIFYEKRMGAEVEADQLGDE 173
GLT + + +KL+ EV DE KLR+ YE++ + D LG E
Sbjct: 585 GLTGNLSATLEQLYAWEKKLYKEVKDEEKLRVVYEEKCRTLKKLDSLGAE 634
>At1g17910.1 68414.m02217 wall-associated kinase, putative contains
similarity to wall-associated kinase 4 GI:3355308 from
[Arabidopsis thaliana]
Length = 764
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +3
Query: 300 RRDGERKRKSVRGCIVDANL-SGLG--SCYCAQGCPGNSWI 413
R + ++ +K R C D ++ SG+G SC CA G GN ++
Sbjct: 295 RGELDKGKKRTRQCTCDNHIASGMGYASCACASGYKGNPYV 335
>At2g26800.2 68415.m03215 hydroxymethylglutaryl-CoA lyase, putative
/ 3-hydroxy-3-methylglutarate-CoA lyase, putative /
HMG-CoA lyase, putative similar to SP|P35915
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) (HMG-CoA
lyase) {Gallus gallus}; contains Pfam profile PF00682:
HMGL-like
Length = 468
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 342 IVDANLSGLGSCYCAQGCPGN 404
IVD++++GLG C A+G GN
Sbjct: 390 IVDSSIAGLGGCPYAKGASGN 410
>At2g26800.1 68415.m03214 hydroxymethylglutaryl-CoA lyase, putative
/ 3-hydroxy-3-methylglutarate-CoA lyase, putative /
HMG-CoA lyase, putative similar to SP|P35915
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) (HMG-CoA
lyase) {Gallus gallus}; contains Pfam profile PF00682:
HMGL-like
Length = 433
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 342 IVDANLSGLGSCYCAQGCPGN 404
IVD++++GLG C A+G GN
Sbjct: 355 IVDSSIAGLGGCPYAKGASGN 375
>At1g67280.1 68414.m07657 lactoylglutathione lyase, putative /
glyoxalase I, putative similar to putative
lactoylglutathione lyase SP:Q39366, GI:2494843 from
[Brassica oleracea]
Length = 350
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +3
Query: 63 PATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPM 230
P CQ + V D + FYEK G E+ + E+K Y + + G + FP+
Sbjct: 216 PEPLCQVMLRVGDLDRAIKFYEKAFGMELLRTRDNPEYK-YTIAMMGYGPEDKFPV 270
>At2g16390.1 68415.m01876 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to RAD54
[Drosophila melanogaster] GI:1765914; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 888
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 400 EIPGLTDGNVPRRLGPKRASKIRKL 474
E+PGL D V L PK+ ++++KL
Sbjct: 620 ELPGLADFTVVLNLSPKQLNEVKKL 644
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,397,150
Number of Sequences: 28952
Number of extensions: 313766
Number of successful extensions: 890
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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