Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_M21
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g61290.1 68416.m06859 hypothetical protein                          29   2.0  
At4g23310.1 68417.m03359 receptor-like protein kinase, putative ...    29   3.6  
At5g46260.1 68418.m05695 disease resistance protein (TIR-NBS-LRR...    28   6.2  

>At3g61290.1 68416.m06859 hypothetical protein
          Length = 455

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 571 PLLLLISTCVDFINWLNQELKV 506
           P++  + TC D+  W+ Q+LKV
Sbjct: 36  PMISSLETCPDYFRWIQQDLKV 57


>At4g23310.1 68417.m03359 receptor-like protein kinase, putative
           similar to receptor-like protein kinase 4 (gi:13506745),
           5 (gi:13506747), and 6 (gi:13506749) from Arabidopsis
           thaliana; contains Pfam protein kinase domain PF00069
          Length = 830

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = -2

Query: 338 CIFLLLRCVDELFQVDAIEASGAIEAMGTSSNVIGQSNQQPGIVDIGEH 192
           CI + L CV E   VD      AI  M T+S+++    +QPG    G H
Sbjct: 755 CIHIALLCVQE--DVDDRPNMSAIVQMLTTSSIVLAVPKQPGFFFRGRH 801


>At5g46260.1 68418.m05695 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1205

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +3

Query: 399 RKFPEICTNIKSTNKQEQTLNIYCIGWQIIKLHSL 503
           R FPEI TNI S N +E    I  + W I K  +L
Sbjct: 835 RSFPEISTNISSLNLEE--TGIEEVPWWIDKFSNL 867


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,149,924
Number of Sequences: 28952
Number of extensions: 243233
Number of successful extensions: 462
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)