Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_M17
         (457 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0340 + 17946133-17946136,17946207-17946342,17946428-179465...    67   7e-12
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086...    38   0.003
12_01_0152 - 1168928-1169377                                           28   4.1  
11_01_0155 - 1287003-1287452                                           28   4.1  
01_02_0092 + 11057604-11057717,11058998-11059531,11060036-110601...    27   5.4  
12_02_0172 - 14891923-14892102,14892894-14892980                       27   9.5  
04_04_0623 + 26669284-26669421,26670906-26671564,26671948-266721...    27   9.5  

>02_03_0340 +
           17946133-17946136,17946207-17946342,17946428-17946584,
           17947330-17947458
          Length = 141

 Score = 66.9 bits (156), Expect = 7e-12
 Identities = 37/87 (42%), Positives = 48/87 (55%)
 Frame = +3

Query: 42  MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 221
           M ++K  ELR K+               + LRVAKVTGG  +KLSKI+VVR +IARV  V
Sbjct: 1   MARIKVDELRGKNKAELQAQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRTSIARVLTV 60

Query: 222 YHQKMKVNLRNHYKNKKYKPLXFKSQE 302
             QK +  LR  YK K   PL  + ++
Sbjct: 61  ISQKQRAALREAYKKKSLLPLDLRPKK 87



 Score = 32.3 bits (70), Expect = 0.19
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 18/58 (31%)
 Frame = +1

Query: 292 RAKKTRAMRKALTKH------------------EAKIKTRKEIRKKSLFPPRVYAVKA 411
           R KKTRA+R+ LTKH                  +  +KT +E +++  FP R YA+KA
Sbjct: 84  RPKKTRAIRRRLTKHQLCYTCIRLLTFSMVAISQLSLKTEREKKREKYFPMRKYAIKA 141


>06_03_1515 -
           30707600-30707613,30708093-30708167,30708596-30708647,
           30708751-30708831,30709145-30709219,30709870-30709977,
           30710026-30710032,30710133-30710268,30710361-30710685
          Length = 290

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 23/62 (37%), Positives = 32/62 (51%)
 Frame = +3

Query: 30  VTVKMGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIAR 209
           VTV M ++K   LR ++               + LRVA+VTGG  +KLS I+ VR A+  
Sbjct: 104 VTVAMARIKVDVLRGRNKAELQAQLKDLKAELSVLRVARVTGGAPNKLSNIK-VRTALRE 162

Query: 210 VY 215
            Y
Sbjct: 163 AY 164


>12_01_0152 - 1168928-1169377
          Length = 149

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 144 KVTGGVASKLSKIRVVRKAIARVYIVYHQK 233
           +V GG   K S+I  +R+AIA+  + Y+QK
Sbjct: 74  RVRGG--GKTSQIYAIRQAIAKALVAYYQK 101


>11_01_0155 - 1287003-1287452
          Length = 149

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 144 KVTGGVASKLSKIRVVRKAIARVYIVYHQK 233
           +V GG   K S+I  +R+AIA+  + Y+QK
Sbjct: 74  RVRGG--GKTSQIYAIRQAIAKALVAYYQK 101


>01_02_0092 +
           11057604-11057717,11058998-11059531,11060036-11060101,
           11060201-11060367,11060445-11060592,11060673-11060763,
           11060850-11061199,11061284-11061388,11061490-11061789
          Length = 624

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 222 YHQKMKVNLRNHYKNKKYKPLXFKSQEDPCYAQGSY*TRSKDQDEER 362
           Y+  M   L NH+  ++ K L  ++Q DP  + G    RS++ + E+
Sbjct: 319 YNISMCKVLSNHWSQERRKFLRTENQRDPNMSNGELGPRSREAEIEQ 365


>12_02_0172 - 14891923-14892102,14892894-14892980
          Length = 88

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +3

Query: 138 VAKVTGGVASKLSKIRVVRKAIARVY--IVYHQKMKVNLRNHYKNKKYK 278
           +A +  GV  K+S       A  R    +V H+ +++  RNH  ++KY+
Sbjct: 1   MANLQVGVTRKISDPNTKAVATDRTIRNLVCHEDLRLTCRNHLSHQKYR 49


>04_04_0623 +
           26669284-26669421,26670906-26671564,26671948-26672140,
           26672220-26672284,26672399-26672609,26673284-26673515,
           26674463-26674521,26674651-26674680,26674761-26674850
          Length = 558

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -3

Query: 236 HLLVIHNVNTCDSFSYNTDLG 174
           H   +HN N CDS  Y  D G
Sbjct: 396 HYWPVHNDNKCDSIKYAVDWG 416


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,481,437
Number of Sequences: 37544
Number of extensions: 119761
Number of successful extensions: 347
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)