Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_M16
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)                136   1e-32
SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)                 42   6e-04
SB_7437| Best HMM Match : PAS (HMM E-Value=7.2e-14)                    31   1.1  
SB_45212| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_16159| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_25676| Best HMM Match : TSP_1 (HMM E-Value=0.0055)                  29   3.3  
SB_21904| Best HMM Match : Vinculin (HMM E-Value=0)                    29   3.3  
SB_51364| Best HMM Match : DUF1431 (HMM E-Value=5.9)                   29   4.4  
SB_24984| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_871| Best HMM Match : 7tm_1 (HMM E-Value=0.0017)                    28   5.8  
SB_36561| Best HMM Match : BACK (HMM E-Value=1.4013e-45)               28   7.6  
SB_55492| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_32980| Best HMM Match : DEAD (HMM E-Value=0)                        28   7.6  
SB_10253| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)
          Length = 203

 Score =  136 bits (330), Expect = 1e-32
 Identities = 77/166 (46%), Positives = 104/166 (62%)
 Frame = +2

Query: 68  MAAGVLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFES 247
           MAAG LYTYP++FRA K LIAA+YSGT ++V P F FG+ N + +FLKKFP GKVPAFE+
Sbjct: 1   MAAGKLYTYPDSFRAQKILIAAEYSGTKIEV-PAFTFGKDNHTAEFLKKFPLGKVPAFET 59

Query: 248 ADGKVLLTESNAIAYYVANESLRGGDLATQARVWQWASWSDSELLPASCAWVFPYLGIMQ 427
                            AN   R   L T      + +++D ELLPA+  WVFP  G+MQ
Sbjct: 60  K---------------TANACTRAMPLLTT-----YVNFADQELLPAAATWVFPTYGMMQ 99

Query: 428 FNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTL 565
           ++KQ+ ++A  D+   + +L+  LL +TFLV ER+TLAD+ V   L
Sbjct: 100 YHKQSTDKAMEDVKKYMTMLNDVLLMKTFLVGERVTLADIAVCCVL 145


>SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)
          Length = 260

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 4/143 (2%)
 Frame = +2

Query: 218 PAGKVPAFESADGKVLLTESNAIAYYVA--NESLRGGDLATQARVWQWASWSDSELLPAS 391
           P   +P  E+ +G      SN I  Y+A  ++ L G DL  + +V QW   +  +   A 
Sbjct: 45  PFNTLPLLETKEGTFF--SSNTIIRYLAASSDKLYGSDLFQRGQVDQWLDITTCDFEAAV 102

Query: 392 CAWVFPYLGIMQFNKQNVERAK--SDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTL 565
            A      G      ++VE AK  +D+   L  ++ HL  R FLV + +T+AD  V +T 
Sbjct: 103 AAVAIAKEG------RDVEGAKIVADINKFLGFVEKHLAGRKFLVGDSVTIADFSV-ATS 155

Query: 566 LHAFQHVLDPSVRSSLINVQRWF 634
           +      L    R    N+  W+
Sbjct: 156 IAVILTSLGDEDRKPYQNIVSWY 178


>SB_7437| Best HMM Match : PAS (HMM E-Value=7.2e-14)
          Length = 505

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = +2

Query: 101 NFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTESN 280
           N   +K +   Q   +  K+ P  V GE N   + +KK     +P      GK +  + +
Sbjct: 105 NIGKFKMVWIDQIDESTKKLKPKMVAGEDNGFVNAIKKVSLEDIPEGNGPSGKAIREKRS 164

Query: 281 AIAYYVANESL 313
            I   + N+SL
Sbjct: 165 IIVNDIENDSL 175


>SB_45212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 401 VFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLAD 544
           ++P +   Q    NV+R  +DL  + K+     L R F V E  T AD
Sbjct: 73  IYPNIMDEQIRTANVQRGSADLQTSAKITLKKFLPRCFSVIESTTSAD 120


>SB_16159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 323 DLATQARVWQWASWSDSELLPASCA 397
           DL T A+V+ WA W   ++   SCA
Sbjct: 78  DLTTTAQVYSWAMWEPWQMRNLSCA 102


>SB_25676| Best HMM Match : TSP_1 (HMM E-Value=0.0055)
          Length = 141

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 323 DLATQARVWQWASWSDSELLPASCA 397
           DL T A+V+ WA W   ++   SCA
Sbjct: 78  DLTTTAQVYSWAMWEPWQMRNLSCA 102


>SB_21904| Best HMM Match : Vinculin (HMM E-Value=0)
          Length = 999

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +2

Query: 8    AKSSLANISSAPLLFPKTPTMAAGVLYTYPENFRAYKALIAAQYSGTDV 154
            AKSSL N+ +   + P      A   YT PEN +  K +  A+Y G  V
Sbjct: 890  AKSSLYNLGAQGNVHPGFHASWAFAGYTGPENVKWAKTVTKARYEGPAV 938


>SB_51364| Best HMM Match : DUF1431 (HMM E-Value=5.9)
          Length = 364

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 230 LFRQETSSRSLRTCWSRQIRNSVLLSHQSRNIVRRSTLYK 111
           +FR +  + +     S ++ N V +SHQSR IV   T+ K
Sbjct: 102 VFRSKQQAPNKAVGRSDEVTNEVAVSHQSRRIVESETVRK 141


>SB_24984| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 7  GKILPRQYFLGPPSLSENSNHG 72
          GK  PR YFLG  ++  N+ HG
Sbjct: 22 GKYYPRVYFLGKATVHGNNGHG 43


>SB_871| Best HMM Match : 7tm_1 (HMM E-Value=0.0017)
          Length = 1675

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = +1

Query: 505  THLPCYRENHTCRCHCLQYTAACFPARARPERPFVAD---KRSALVP 636
            T  P +R +HT     L+     +PA+ RP+ P  A    K+ A VP
Sbjct: 1581 TQCPIFRPSHTIHHPPLRSRNVRYPAQVRPQYPLQASLNVKKGARVP 1627


>SB_36561| Best HMM Match : BACK (HMM E-Value=1.4013e-45)
          Length = 554

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +2

Query: 419 IMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIV 553
           +M + K +VE  K DL   L+ +   LLTR FL+ + +   D+I+
Sbjct: 194 VMSWIKHDVESRKKDLANLLEHIRFPLLTRKFLI-DTVAKEDLIM 237


>SB_55492| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1303

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -2

Query: 80   PRPPWLEFSEREGGPRKYWR 21
            P PP  EF ERE   RK WR
Sbjct: 1240 PNPPPGEFQEREVNSRKRWR 1259


>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 985

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = +1

Query: 496 SSHTHLPC--YRENHTCRCHCLQYT 564
           S +T  PC  Y+   TC C C+ YT
Sbjct: 873 SHYTPFPCPHYQGGPTCECQCMGYT 897


>SB_10253| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -2

Query: 179 QIRNSVLLSHQSRNI-VRRSTL-YKRGSFPDKCKVPRPPWLEFSER 48
           Q+R+ +L+  +  N   RR TL  K  +F + CK P  P  + SER
Sbjct: 37  QLRSKLLVLWRDENRRTRRKTLGAKHKAFTEGCKEPEGPSTDISER 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,443,525
Number of Sequences: 59808
Number of extensions: 516980
Number of successful extensions: 1392
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1388
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)