Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_M14
(613 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 260 1e-70
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 150 1e-37
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 149 4e-37
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 121 9e-29
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 78 9e-16
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 76 4e-15
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 72 6e-14
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 49 5e-07
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 31 0.13
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 1.6
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 2.1
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 2.1
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 25 6.5
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 25 8.6
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 25 8.6
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 8.6
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 260 bits (636), Expect = 1e-70
Identities = 124/165 (75%), Positives = 133/165 (80%)
Frame = +2
Query: 116 KKLPRLVVDNGSGYVQGXXXXXXXXXXXVPLXSWEGPAIRXVMVGMGQKDSYVGDEAQSK 295
+++ LV+DNGSG + P P +MVGMGQKDSYVGDEAQSK
Sbjct: 3 EEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGR-PRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 296 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTX 475
RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMT
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQ 121
Query: 476 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIY 610
I+FETFN PA YVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIY
Sbjct: 122 IIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIY 166
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 150 bits (364), Expect = 1e-37
Identities = 74/161 (45%), Positives = 102/161 (63%), Gaps = 1/161 (0%)
Frame = +2
Query: 131 LVVDNGSGYVQGXXXXXXXXXXXVPLXSWEGPAIRXVMVGMGQKDSYVGDEAQSKRGILT 310
+ +DNGSG+++ P R VM QKD +VG EAQ+ RG+L
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHER-VMPSSIQKDMFVGSEAQNLRGLLK 70
Query: 311 LKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTXIMFE 487
++ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL N+EK+ +E
Sbjct: 71 IQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYE 130
Query: 488 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIY 610
T N PA+ ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY
Sbjct: 131 TLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIY 171
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 149 bits (360), Expect = 4e-37
Identities = 73/162 (45%), Positives = 107/162 (66%), Gaps = 2/162 (1%)
Frame = +2
Query: 131 LVVDNGSGYVQGXXXXXXXXXXXVPLXSWEGPAIRXV-MVGMGQ-KDSYVGDEAQSKRGI 304
+V+DNG+G+V+ P P +R G Q KD VGDEA++ R +
Sbjct: 6 IVLDNGTGFVKVGYAKDNFPRFQFPSIVGR-PILRAEEKTGNVQIKDVMVGDEAEAVRSL 64
Query: 305 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMF 484
L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM MF
Sbjct: 65 LQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMF 124
Query: 485 ETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIY 610
E + +YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+Y
Sbjct: 125 ERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVY 166
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 121 bits (291), Expect = 9e-29
Identities = 58/124 (46%), Positives = 78/124 (62%), Gaps = 9/124 (7%)
Frame = +2
Query: 263 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 439
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 440 LNPKANREKMTXIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSH 595
LNP NRE IMFE+FN +Y+A+QAVL+L AS + TG V+DSGDGV+H
Sbjct: 133 LNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTH 192
Query: 596 TVPI 607
+P+
Sbjct: 193 IIPV 196
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 162 KAGFAGDDAPRAVFPS 209
K G+AG+DAP VFP+
Sbjct: 18 KLGYAGNDAPSYVFPT 33
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 78.2 bits (184), Expect = 9e-16
Identities = 38/122 (31%), Positives = 71/122 (58%), Gaps = 3/122 (2%)
Frame = +2
Query: 251 MGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 427
+ + + VG++ + G ++ + P E +++NWD ME++ +TF +L + EHP+ +
Sbjct: 62 LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICM 120
Query: 428 TEAPLNPKANREKMTXIMFETFNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTV 601
TE NP R MT ++FE +N P++ I + S Y + + ++GIVL+ G+ SH +
Sbjct: 121 TEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVI 180
Query: 602 PI 607
P+
Sbjct: 181 PV 182
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 76.2 bits (179), Expect = 4e-15
Identities = 38/102 (37%), Positives = 54/102 (52%)
Frame = +2
Query: 305 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTXIMF 484
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 485 ETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIY 610
E+ PA Y+A Q + +ASG+ T ++D G S IY
Sbjct: 123 ESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIY 164
Score = 25.8 bits (54), Expect = 4.9
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 162 KAGFAGDDAPRAVFPSXRGK 221
+ GF+G+D P+ V PS G+
Sbjct: 24 RIGFSGEDIPKCVLPSYCGE 43
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 72.1 bits (169), Expect = 6e-14
Identities = 44/166 (26%), Positives = 84/166 (50%), Gaps = 2/166 (1%)
Frame = +2
Query: 116 KKLPRLVVDNGSGYVQGXXXXXXXXXXXVPLXSWEGPAIRXVMVGMGQKDSYVGDEAQSK 295
+++P LV+D GS + + +P S+ G +R + G ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILP--SYYG--VRSDVTG---RNKYVVDELQIH 60
Query: 296 RGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 469
I + +K +GI+ +W+ W +L+V P E+ +++TE NP++ R+++
Sbjct: 61 APIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQI 120
Query: 470 TXIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 607
FE + PA Y+ QAV +A+ ++T +++D G + P+
Sbjct: 121 MEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPV 166
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 49.2 bits (112), Expect = 5e-07
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Frame = +2
Query: 320 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTXIMFE 487
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE T FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 488 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 607
P +A + ++ LYA G G+V+D G + PI
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPI 211
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.1 bits (67), Expect = 0.13
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Frame = +2
Query: 380 FYNELRVAPEEHPVLLTE--APLNPKANREKMTXIMFETFNTPAM---YVAIQ 523
+Y L E+HP+LLT+ A L P+ + ++ I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +3
Query: 504 PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPST 611
P T+P P T PV P S P+ P P PS+
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSS 1071
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 525 PCSRCTRPVVPPVSCWTPATVSPTPCPST 611
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +3
Query: 501 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPS 608
PP P + T PV PV+ A P P P+
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPA 402
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 2 KLLESVSCFSRLAVTAGRLIFILSHLHLTNF 94
KL E+++CF L + F+L+ L +T F
Sbjct: 344 KLREALNCFQSLPIEQQNTPFVLAKLGITYF 374
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 422 LLTEAPLNPKANREKMTXIMFETFN 496
+L APL+ + +KM ++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 522 KPCSRCTRPVVPPVSCWTPATVSPTPCP 605
KP S+ TRP +P + T +V P P P
Sbjct: 65 KPSSKATRPYIPSYTRLT-YSVPPLPIP 91
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 239 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 325
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,647,111
Number of Sequences: 5004
Number of extensions: 54679
Number of successful extensions: 162
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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