Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_M12
         (564 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   2.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   2.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   2.8  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   6.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   6.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   6.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.6  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 198 FVNLFLYIVGSQFQPGR 148
           FVN FL+++ +Q   GR
Sbjct: 16  FVNSFLFVIAAQDSSGR 32


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 198 FVNLFLYIVGSQFQPGR 148
           FVN FL+++ +Q   GR
Sbjct: 16  FVNSFLFVIAAQDSSGR 32


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 198 FVNLFLYIVGSQFQPGR 148
           FVN FL+++ +Q   GR
Sbjct: 16  FVNSFLFVIAAQDSSGR 32


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 7   CLPAAIFLVSLVVVVRSAI 63
           CL   IFL+ +VV  R+ I
Sbjct: 126 CLSDTIFLIDIVVNFRTGI 144


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 7   CLPAAIFLVSLVVVVRSAI 63
           CL   IFL+ +VV  R+ I
Sbjct: 126 CLSDTIFLIDIVVNFRTGI 144


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 7   CLPAAIFLVSLVVVVRSAI 63
           CL   IFL+ +VV  R+ I
Sbjct: 126 CLSDTIFLIDIVVNFRTGI 144


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 14/55 (25%), Positives = 21/55 (38%)
 Frame = +3

Query: 135 PPQCPYLVEIDCRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNWQKDPP 299
           PPQCP   ++D     G    T K    + ++  +A     S P       +D P
Sbjct: 565 PPQCPRFRKLDSPSDSGIESGTEKPDKPASSSASSAPTSVCSSPRSEDKEVEDMP 619


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,757
Number of Sequences: 438
Number of extensions: 3067
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)