Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_M12
(564 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g00100.1 68417.m00010 40S ribosomal protein S13 (RPS13A) simi... 138 2e-33
At3g60770.1 68416.m06798 40S ribosomal protein S13 (RPS13A) AtRP... 138 2e-33
At3g07990.1 68416.m00976 serine carboxypeptidase S10 family prot... 31 0.70
At1g65720.1 68414.m07459 expressed protein 29 1.6
At5g50280.1 68418.m06226 pentatricopeptide (PPR) repeat-containi... 29 2.1
At3g21175.2 68416.m02676 zinc finger (GATA type) family protein ... 29 2.1
At3g21175.1 68416.m02675 zinc finger (GATA type) family protein ... 29 2.1
At4g17570.1 68417.m02627 zinc finger (GATA type) family protein 28 5.0
At2g28340.1 68415.m03444 zinc finger (GATA type) family protein ... 28 5.0
At5g43930.1 68418.m05374 transducin family protein / WD-40 repea... 27 8.7
At5g20300.1 68418.m02416 chloroplast outer membrane protein, put... 27 8.7
At5g03390.1 68418.m00292 expressed protein contains Pfam profile... 27 8.7
At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak sim... 27 8.7
At1g01320.1 68414.m00048 tetratricopeptide repeat (TPR)-containi... 27 8.7
>At4g00100.1 68417.m00010 40S ribosomal protein S13 (RPS13A) similar
to ribosomal protein S13; PF00312 (View Sanger Pfam):
ribosomal protein S15; identical to cDNA AtRPS13A mRNA
for cytoplasmic ribosomal protein S13 GI:6521011
Length = 151
Score = 138 bits (334), Expect = 2e-33
Identities = 67/92 (72%), Positives = 76/92 (82%)
Frame = +2
Query: 260 LPK*DS*LAKRSSXIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVE 439
+P+ S + I+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVE
Sbjct: 60 IPQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVE 119
Query: 440 SRIHRLARYYKTKSVLPPNWKYESSTASALVA 535
SRIHRLARYYK LPP WKYES+TAS LVA
Sbjct: 120 SRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
Score = 114 bits (274), Expect = 4e-26
Identities = 53/73 (72%), Positives = 60/73 (82%)
Frame = +1
Query: 82 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 261
MGRMH+ GKGIS SALPY+RS P+WLK T+ DV E I K KKGLTPSQIGV+LRDSHG+
Sbjct: 1 MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60
Query: 262 AQVRFVTGKKILR 300
QV+ VTG KILR
Sbjct: 61 PQVKSVTGSKILR 73
>At3g60770.1 68416.m06798 40S ribosomal protein S13 (RPS13A)
AtRPS13A mRNA for cytoplasmic ribosomal protein S13,
Arabidopsis thaliana,AB031739
Length = 151
Score = 138 bits (334), Expect = 2e-33
Identities = 67/92 (72%), Positives = 76/92 (82%)
Frame = +2
Query: 260 LPK*DS*LAKRSSXIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVE 439
+P+ S + I+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVE
Sbjct: 60 IPQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVE 119
Query: 440 SRIHRLARYYKTKSVLPPNWKYESSTASALVA 535
SRIHRLARYYK LPP WKYES+TAS LVA
Sbjct: 120 SRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
Score = 113 bits (272), Expect = 8e-26
Identities = 53/73 (72%), Positives = 59/73 (80%)
Frame = +1
Query: 82 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 261
MGRMH+ GKGIS SALPY+RS P+WLK T DV E I K KKGLTPSQIGV+LRDSHG+
Sbjct: 1 MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60
Query: 262 AQVRFVTGKKILR 300
QV+ VTG KILR
Sbjct: 61 PQVKSVTGSKILR 73
>At3g07990.1 68416.m00976 serine carboxypeptidase S10 family protein
similar to serine carboxypeptidase II (CP-MII)
GB:CAA70815 [Hordeum vulgare]
Length = 459
Score = 30.7 bits (66), Expect = 0.70
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 118 GRYPYQERAYDPCLRLFT 65
GRYP+ RAYDPC ++
Sbjct: 300 GRYPWMSRAYDPCTERYS 317
>At1g65720.1 68414.m07459 expressed protein
Length = 180
Score = 29.5 bits (63), Expect = 1.6
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = -2
Query: 290 FLPVTNLTWATPCESLSITPICEGVRPFFPSL*ICSFTSSAVNFNQVGTLRR 135
FL +T +T A PC++ I+ + P P+L FTS+ F V T+RR
Sbjct: 16 FLSITTITTARPCKTFLISSYSLSITPENPNL-ESDFTST--RFVTVFTIRR 64
>At5g50280.1 68418.m06226 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 723
Score = 29.1 bits (62), Expect = 2.1
Identities = 22/80 (27%), Positives = 39/80 (48%)
Frame = +2
Query: 287 KRSSXIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARY 466
KR+ K M + +P+ Y +A+ K +NRKDK + L ++ S+ R+
Sbjct: 642 KRAFFYHKMMVKSGQVPDPRSYEKLRAILEDKAKTKNRKDKTA--ILGIINSKFGRVKA- 698
Query: 467 YKTKSVLPPNWKYESSTASA 526
KTK WKY+++ ++
Sbjct: 699 -KTKGKKDEFWKYKTNRTTS 717
>At3g21175.2 68416.m02676 zinc finger (GATA type) family protein
similar to zinc finger protein ZIM gi:8918533 from
[Arabidopsis thaliana]; contains Pfam PF00320: GATA zinc
finger
Length = 295
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Frame = +3
Query: 159 EIDCRRCKGTNLQT--WKEGSHSLTNWCNAEGFTWSCPSKIRNWQKDPP 299
E+ CR C + T + G CNA G W+ +R+ K PP
Sbjct: 214 EVLCRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSKVPP 262
>At3g21175.1 68416.m02675 zinc finger (GATA type) family protein
similar to zinc finger protein ZIM gi:8918533 from
[Arabidopsis thaliana]; contains Pfam PF00320: GATA zinc
finger
Length = 297
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Frame = +3
Query: 159 EIDCRRCKGTNLQT--WKEGSHSLTNWCNAEGFTWSCPSKIRNWQKDPP 299
E+ CR C + T + G CNA G W+ +R+ K PP
Sbjct: 216 EVLCRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSKVPP 264
>At4g17570.1 68417.m02627 zinc finger (GATA type) family protein
Length = 510
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/39 (30%), Positives = 15/39 (38%)
Frame = +3
Query: 168 CRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNW 284
C C TN W+ G CNA G W + N+
Sbjct: 7 CYHCGVTNTPLWRNGPPEKPVLCNACGSRWRTKGTLVNY 45
>At2g28340.1 68415.m03444 zinc finger (GATA type) family protein
and genefinder
Length = 315
Score = 27.9 bits (59), Expect = 5.0
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +3
Query: 162 IDCRRCKGTNLQTWKEGSHSLTNWCNAEG 248
+ C C+ T W+EG + CNA G
Sbjct: 215 LKCTHCETTTTPQWREGPNGRKTLCNACG 243
>At5g43930.1 68418.m05374 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo
sapiens]
Length = 726
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 183 GTNLQTWKEGSHSLTNWCNAE 245
GTN ++ KE SLT+W AE
Sbjct: 70 GTNNESMKETGQSLTSWVEAE 90
>At5g20300.1 68418.m02416 chloroplast outer membrane protein,
putative similar to chloroplast protein import component
Toc159 [Pisum sativum] GI:8489806, chloroplast outer
envelope protein 86 [Pisum sativum] GI:599958,
GTP-binding protein [Pisum sativum] GI:576509
Length = 793
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -1
Query: 282 SYESYLGNSM*IPQHYTNL*GSETLLSKFVNL 187
+YESY+G M + QHY + S+T L V L
Sbjct: 308 NYESYVGQRMDVVQHYIHQAVSDTKLENPVLL 339
>At5g03390.1 68418.m00292 expressed protein contains Pfam profile
PF03478: Protein of unknown function (DUF295)
Length = 373
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +3
Query: 210 GSHSLTNWCNAEGFTWSCPSKIRNWQ-KDPPXS 305
G + WCN F W +++ W K+PP S
Sbjct: 250 GDSFIVYWCNERSFYWK-KGEVKPWTGKNPPPS 281
>At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak
similarity to Chaperone protein dnaJ (Swiss-Prot:Q9ZFC5)
[Methylovorus sp.]
Length = 419
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 168 CRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPS 269
C C G L K+GS ++ CN +G CP+
Sbjct: 232 CSTCYGRGLVAHKDGSDTICTNCNGKG-KLPCPT 264
>At1g01320.1 68414.m00048 tetratricopeptide repeat (TPR)-containing
protein low similarity to SP|P46825 Kinesin light chain
(KLC) {Loligo pealeii}; contains Pfam profile PF00515:
TPR Domain
Length = 1797
Score = 27.1 bits (57), Expect = 8.7
Identities = 18/64 (28%), Positives = 27/64 (42%)
Frame = +3
Query: 81 HGSYARSW*GYLPVGAALPPQCPYLVEIDCRRCKGTNLQTWKEGSHSLTNWCNAEGFTWS 260
+G A +W +P AA P + ++ R G ++GS+ L W N F S
Sbjct: 278 YGFRANTW--LIPPTAAQSPAAFPPLPVEDERWGGDGGGQGRDGSYDLVPWSNEFAFIAS 335
Query: 261 CPSK 272
P K
Sbjct: 336 MPCK 339
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,675,569
Number of Sequences: 28952
Number of extensions: 233140
Number of successful extensions: 669
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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