Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_M10
(649 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc... 155 5e-39
SPBC3H7.04 |||mitochondrial ribosomal protein subunit S26|Schizo... 35 0.009
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 32 0.062
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa... 30 0.33
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz... 29 0.58
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 26 5.4
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 7.1
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 7.1
SPAC30C2.05 |erv14||cornichon family protein Erv14|Schizosacchar... 25 9.4
>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 218
Score = 155 bits (376), Expect = 5e-39
Identities = 77/159 (48%), Positives = 101/159 (63%), Gaps = 5/159 (3%)
Frame = +3
Query: 126 IRVAGASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAK 305
+ +A K TLP LPY YNALEP +S IM LHH KHH TY+NNLN A+EKLA
Sbjct: 16 VSIARGVHTKATLPPLPYAYNALEPALSETIMKLHHDKHHQTYVNNLNAAQEKLADPNL- 74
Query: 306 GDIDTIINLAPALKFNGGGHINHSIFWHNLSP---NGGKP--SDVLTKAVEKDFGSWDNI 470
D++ + L A+KFNGGGHINHS+FW L+P GGKP S L KA+ +GS ++
Sbjct: 75 -DLEGEVALQAAIKFNGGGHINHSLFWKILAPQKEGGGKPVTSGSLHKAITSKWGSLEDF 133
Query: 471 KNQLSTASVAVQGSGWGWLGYNKQMKKLQIATCQNQDPL 587
+ +++ A ++QGSGW WL +K L+I T NQD +
Sbjct: 134 QKEMNAALASIQGSGWAWLIVDKD-GSLRITTTANQDTI 171
Score = 31.1 bits (67), Expect = 0.14
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +1
Query: 610 PLFGIDVWEHAYY 648
P+ GID WEHAYY
Sbjct: 176 PIIGIDAWEHAYY 188
>SPBC3H7.04 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 35.1 bits (77), Expect = 0.009
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Frame = +3
Query: 366 INHSIFWHNL-SPNG-GKPSDV----LTKAVEKDFGSWDNIKNQLSTASVAVQGSGWGWL 527
+NH F+ L SP +D+ L ++ FGS+ +K+Q+ +V G GW WL
Sbjct: 76 VNHDFFFSGLISPERPSADADLGAINLKPGIDASFGSFGELKSQMVDVGNSVFGDGWLWL 135
Query: 528 GYNKQMKKLQIATCQN 575
Y+ + + N
Sbjct: 136 VYSPEKSLFSLLCTYN 151
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 32.3 bits (70), Expect = 0.062
Identities = 31/110 (28%), Positives = 47/110 (42%)
Frame = +3
Query: 147 RQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAKGDIDTII 326
RQKHT P P +A S HH HH+ N L EK K + ++
Sbjct: 97 RQKHTAPATPIPVSA----------SRHHKPHHSGLKNLL----EKAMHPGHKSNANSPT 142
Query: 327 NLAPALKFNGGGHINHSIFWHNLSPNGGKPSDVLTKAVEKDFGSWDNIKN 476
+ +P+ F G IN+ I N S + P + + + K S+ ++KN
Sbjct: 143 SESPSKGF--GSFINNHILHKNTSSHPSSPVNGKSSDIHKS-QSYQHLKN 189
>SPBC12C2.04 |||NAD binding dehydrogenase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 29.9 bits (64), Expect = 0.33
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +3
Query: 237 KHHATYINNLNVAEEKLAQAQAKGDIDTIINLAPAL-KFNGGGHINHSIFWHNLSPNGG 410
K+HA K+ QA K D +N+A + ++N N+ +FW +S +GG
Sbjct: 157 KYHAIISIGYMFRYLKIVQAAKKYVADNNLNIACTIARYNSAYEHNNKLFWWYMSKSGG 215
>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 277
Score = 29.1 bits (62), Expect = 0.58
Identities = 31/137 (22%), Positives = 56/137 (40%), Gaps = 13/137 (9%)
Frame = +3
Query: 156 HTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLN--VAEEKLAQAQAKGDIDTIIN 329
HT+P L + N L P+ S E + + +H + LN V +L + I
Sbjct: 39 HTVPNLS-QRNLL-PLFSPEALDIAWDQHQRQVVKELNDRVKGTELEDSSVFNIIFQTAA 96
Query: 330 L---APALKFNGGGHINHSIFWHNLSPNGG--------KPSDVLTKAVEKDFGSWDNIKN 476
L A +F + NH F + + + + KAV ++FGS +N+ +
Sbjct: 97 LPEHAATFQFASQAYNNHFFFQSLIGKRAADAKKNSKYEANAAINKAVNENFGSKENLLS 156
Query: 477 QLSTASVAVQGSGWGWL 527
++ + G+ W W+
Sbjct: 157 KIHELASNSFGACWLWI 173
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 335 CKVDNGVDITFSLCLCEFLFSNV 267
C VD+ +I+ SLC EF+ S V
Sbjct: 452 CLVDSFENISHSLCTTEFILSRV 474
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -2
Query: 555 AISSFVCCSQANPSLSPVLPQKLSTVDSLCYPRIQSLSQRL 433
A SFV S N + P++ Q+ + + C+ R QSL ++
Sbjct: 499 AKGSFVIQSHINGRVIPLIKQRFESFATECFIRPQSLKLKV 539
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 257 DISRVMFAVMKTHDFTANDRLQCIVLVRK 171
D V+F+ KT ANDRLQCI+ ++
Sbjct: 3138 DQQNVLFSKTKT----ANDRLQCIIQTKQ 3162
>SPAC30C2.05 |erv14||cornichon family protein
Erv14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 141
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 395 QVVPKDRVVDVTTTIEFQGWCKVDNGVDITFSLCL 291
QV+ K ++D T G K DN + +TF L +
Sbjct: 91 QVIHKTHILDATEIFRQLGRHKRDNFIKVTFYLIM 125
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,722,629
Number of Sequences: 5004
Number of extensions: 57156
Number of successful extensions: 153
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -