Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_M09
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40)        81   4e-16
SB_44699| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)        59   2e-09
SB_32312| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)        59   2e-09
SB_5679| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)         59   2e-09
SB_35727| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.1e-07)        59   2e-09
SB_6626| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)         59   2e-09
SB_41736| Best HMM Match : Ribosomal_L24e (HMM E-Value=3.2e-07)        57   1e-08
SB_49067| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.8e-07)        56   2e-08
SB_12479| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.009
SB_4475| Best HMM Match : VPEP (HMM E-Value=7.2)                       29   1.7  
SB_14930| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_11510| Best HMM Match : MGDG_synth (HMM E-Value=5.3)                29   3.0  
SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_33054| Best HMM Match : DEAD (HMM E-Value=0.42)                     28   5.3  

>SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40)
          Length = 154

 Score = 81.4 bits (192), Expect = 4e-16
 Identities = 38/70 (54%), Positives = 46/70 (65%)
 Frame = +3

Query: 27  MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQVQ 206
           MK+ LC YSGYKIYPGHGK  V+ DGK F FLN +CE A LMRRNPR        + + +
Sbjct: 1   MKLELCNYSGYKIYPGHGKRYVRQDGKVFNFLNKRCERALLMRRNPREVTWTVLYRRKHK 60

Query: 207 KGPRGRTSKE 236
           KG +   SK+
Sbjct: 61  KGTQEEVSKK 70



 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 28/53 (52%), Positives = 33/53 (62%)
 Frame = +1

Query: 169 KVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 327
           +VTWTVLYRRK KKG +EE               + GASL +I+AKRN KPEV
Sbjct: 48  EVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 100


>SB_44699| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
          Length = 113

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 28/53 (52%), Positives = 33/53 (62%)
 Frame = +1

Query: 169 KVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 327
           +VTWTVLYRRK KKG +EE               + GASL +I+AKRN KPEV
Sbjct: 28  EVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 80



 Score = 38.3 bits (85), Expect = 0.004
 Identities = 19/44 (43%), Positives = 25/44 (56%)
 Frame = +3

Query: 105 KTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQVQKGPRGRTSKE 236
           K F FLN +CE A LMRRNPR        + + +KG +   SK+
Sbjct: 7   KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKK 50


>SB_32312| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
          Length = 90

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 28/53 (52%), Positives = 33/53 (62%)
 Frame = +1

Query: 169 KVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 327
           +VTWTVLYRRK KKG +EE               + GASL +I+AKRN KPEV
Sbjct: 28  EVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 80



 Score = 38.3 bits (85), Expect = 0.004
 Identities = 19/44 (43%), Positives = 25/44 (56%)
 Frame = +3

Query: 105 KTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQVQKGPRGRTSKE 236
           K F FLN +CE A LMRRNPR        + + +KG +   SK+
Sbjct: 7   KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKK 50


>SB_5679| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
          Length = 90

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 28/53 (52%), Positives = 33/53 (62%)
 Frame = +1

Query: 169 KVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 327
           +VTWTVLYRRK KKG +EE               + GASL +I+AKRN KPEV
Sbjct: 28  EVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 80



 Score = 38.3 bits (85), Expect = 0.004
 Identities = 19/44 (43%), Positives = 25/44 (56%)
 Frame = +3

Query: 105 KTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQVQKGPRGRTSKE 236
           K F FLN +CE A LMRRNPR        + + +KG +   SK+
Sbjct: 7   KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKK 50


>SB_35727| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.1e-07)
          Length = 139

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 28/53 (52%), Positives = 33/53 (62%)
 Frame = +1

Query: 169 KVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 327
           +VTWTVLYRRK KKG +EE               + GASL +I+AKRN KPEV
Sbjct: 63  EVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 115



 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 20/48 (41%), Positives = 27/48 (56%)
 Frame = +3

Query: 93  KVDGKTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQVQKGPRGRTSKE 236
           K  GK F +LN +CE A LMRRNPR        + + +KG +   SK+
Sbjct: 38  KFQGKVFNYLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKK 85


>SB_6626| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
          Length = 90

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 28/53 (52%), Positives = 33/53 (62%)
 Frame = +1

Query: 169 KVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 327
           +VTWTVLYRRK KKG +EE               + GASL +I+AKRN KPEV
Sbjct: 28  EVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 80



 Score = 38.3 bits (85), Expect = 0.004
 Identities = 19/44 (43%), Positives = 25/44 (56%)
 Frame = +3

Query: 105 KTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQVQKGPRGRTSKE 236
           K F FLN +CE A LMRRNPR        + + +KG +   SK+
Sbjct: 7   KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKK 50


>SB_41736| Best HMM Match : Ribosomal_L24e (HMM E-Value=3.2e-07)
          Length = 104

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 27/53 (50%), Positives = 32/53 (60%)
 Frame = +1

Query: 169 KVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 327
           +VTWTVLYRR  KKG +EE               + GASL +I+AKRN KPEV
Sbjct: 28  EVTWTVLYRRMHKKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 80



 Score = 37.9 bits (84), Expect = 0.005
 Identities = 19/44 (43%), Positives = 24/44 (54%)
 Frame = +3

Query: 105 KTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQVQKGPRGRTSKE 236
           K F FLN +CE A LMRRNPR        +   +KG +   SK+
Sbjct: 7   KVFNFLNKRCERALLMRRNPREVTWTVLYRRMHKKGTQEEVSKK 50


>SB_49067| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.8e-07)
          Length = 90

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 27/53 (50%), Positives = 32/53 (60%)
 Frame = +1

Query: 169 KVTWTVLYRRKFKKGQEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 327
           +VTWTVLYR K KKG +EE               + GASL +I+AKRN KPEV
Sbjct: 28  EVTWTVLYRCKHKKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 80



 Score = 38.7 bits (86), Expect = 0.003
 Identities = 19/44 (43%), Positives = 25/44 (56%)
 Frame = +3

Query: 105 KTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQVQKGPRGRTSKE 236
           K F FLN +CE A LMRRNPR        + + +KG +   SK+
Sbjct: 7   KVFNFLNKRCERALLMRRNPREVTWTVLYRCKHKKGTQEEVSKK 50


>SB_12479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 52

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = +1

Query: 205 KKGQEEEXXXXXXXXXXXXXXXIVGASLSDIMAKRNMKPEV 327
           KKG +EE               + GASL +I+AKRN KPEV
Sbjct: 2   KKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 42


>SB_4475| Best HMM Match : VPEP (HMM E-Value=7.2)
          Length = 129

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
 Frame = +2

Query: 137 SRPFDEEESSXK*HGLSCTGASSKRAKRKNKQRNV----LEGPKS 259
           + P +EE ++    GLS   +S  + K+K K++++    LE PKS
Sbjct: 41  AEPMEEESAATALAGLSLGSSSGTKKKKKKKRKHIFQATLENPKS 85


>SB_14930| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +3

Query: 72  GHGKTM--VKV-DGKTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQ 200
           G GKT   VK+ +G+T T L  + + A   R NPR  N   PV AQ
Sbjct: 57  GSGKTEWDVKMFEGRTITVLTPENDLADDHRNNPRLQNNRKPVNAQ 102


>SB_11510| Best HMM Match : MGDG_synth (HMM E-Value=5.3)
          Length = 368

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +3

Query: 72  GHGKTM--VKV-DGKTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQ 200
           G GKT   VK+ +G+T T L  + + A   R NPR  N   PV AQ
Sbjct: 309 GSGKTEWDVKMFEGRTITVLTPENDLADDHRNNPRLQNNRKPVNAQ 354


>SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2937

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 236  FFACSSSWPFLNLRLYRTVHVTLXRIP 156
            +FAC+   P  N  +  T HVTL  IP
Sbjct: 2679 YFACTRDLPISNFDVISTRHVTLQAIP 2705


>SB_33054| Best HMM Match : DEAD (HMM E-Value=0.42)
          Length = 1088

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +3

Query: 72  GHGKT--MVKV-DGKTFTFLNSKCEAAHLMRRNPR*SNMDCPVQAQ 200
           G GKT   VK+ +G+T   L  + + A   R NPR  N   PV AQ
Sbjct: 737 GSGKTEWAVKMFEGRTIAVLTPENDLADDHRNNPRLQNSGKPVNAQ 782


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,596,201
Number of Sequences: 59808
Number of extensions: 221231
Number of successful extensions: 435
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)