Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_M08
         (454 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    38   7e-05
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    38   7e-05
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.6  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   3.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   3.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   3.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   4.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   4.7  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    21   8.3  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 37.5 bits (83), Expect = 7e-05
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +2

Query: 221 WSSMDSSNSPLTDSGPSASEDCTPSTSSEPSRGRLSASSPISP 349
           W S+D+SN  ++  GP +  D  P T+S  + G  S S P SP
Sbjct: 29  WLSLDNSNMSMSSVGPQSPLDMKPDTASLINPGNFSPSGPNSP 71


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 37.5 bits (83), Expect = 7e-05
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +2

Query: 221 WSSMDSSNSPLTDSGPSASEDCTPSTSSEPSRGRLSASSPISP 349
           W S+D+SN  ++  GP +  D  P T+S  + G  S S P SP
Sbjct: 29  WLSLDNSNMSMSSVGPQSPLDMKPDTASLINPGNFSPSGPNSP 71


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 71  GGRWRWCCSLRGPRTPPPP 127
           G R+   C + GP  PP P
Sbjct: 427 GARFGGSCLIHGPPLPPLP 445


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 71  GGRWRWCCSLRGPRTPPPP 127
           G R+   C + GP  PP P
Sbjct: 427 GARFGGSCLIHGPPLPPLP 445


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 320 GREKVRWRWKGCSLHLPMGRSQLTVNSKSP 231
           GR ++   W+ C+L L   R  L+  +KSP
Sbjct: 616 GRAEIN-EWERCNLGLEPPRVILSSGAKSP 644


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 320 GREKVRWRWKGCSLHLPMGRSQLTVNSKSP 231
           GR ++   W+ C+L L   R  L+  +KSP
Sbjct: 616 GRAEIN-EWERCNLGLEPPRVILSSGAKSP 644


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 320 GREKVRWRWKGCSLHLPMGRSQLTVNSKSP 231
           GR ++   W+ C+L L   R  L+  +KSP
Sbjct: 616 GRAEIN-EWERCNLGLEPPRVILSSGAKSP 644


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 128 WEGAGCGALLMSSTSAICPRHFHKKMFWLHY 36
           W G   G    SSTS+  P++ +K     HY
Sbjct: 93  WPGDATGLSNRSSTSSNDPKNQYKNQNNNHY 123


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 396 DILGLVPLGSGKRRVSGE 343
           ++LGL+P GS     SGE
Sbjct: 374 ELLGLMPSGSSVHSDSGE 391



 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 112 HPAPSHVHSSRVP 150
           H +PS  HSS VP
Sbjct: 632 HQSPSQNHSSAVP 644


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 114 PRPLPRPFFTGADLPKRM 167
           P P+P P + G  LP+ M
Sbjct: 114 PVPIPVPVYYGNFLPRPM 131


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,045
Number of Sequences: 438
Number of extensions: 2456
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)