Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_M06
         (386 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces...    77   1e-15
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    28   0.59 
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    27   0.78 
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    25   3.1  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   4.1  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   5.5  
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    24   7.2  

>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 118

 Score = 76.6 bits (180), Expect = 1e-15
 Identities = 35/50 (70%), Positives = 43/50 (86%)
 Frame = +2

Query: 137 EKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMP 286
           +K Q   S +HRIRITLTSRNVR+LEKVC+DL+N AK ++LRVKGPVR+P
Sbjct: 8   QKEQQIPSTVHRIRITLTSRNVRNLEKVCSDLVNRAKDKQLRVKGPVRLP 57



 Score = 29.1 bits (62), Expect = 0.25
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = +1

Query: 325 GEGSKTWDRFQMRI 366
           GEGSKTW+ ++MRI
Sbjct: 71  GEGSKTWETYEMRI 84


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 27.9 bits (59), Expect = 0.59
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 119  VSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVK 268
            +S   IEKP+A  SPIH       +  +R L+ V      GA++ +  VK
Sbjct: 891  LSSSLIEKPRASSSPIHH----ANNNGLRLLKDVLKKTYRGARENRSSVK 936


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 27.5 bits (58), Expect = 0.78
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 110 AAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRS 208
           A V +  D+EKPQ +V+   R+   L S N R+
Sbjct: 491 ANVTTSADVEKPQVKVATSSRVDYDLKSPNQRT 523


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 91  IPAEINNFSIKNCSALNRRNL 29
           + +E+N+  IKN S LN RNL
Sbjct: 592 LESELNSSKIKNESLLNERNL 612


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +1

Query: 277 PHANQDPAYHHP*NSCGEGSKTWDR 351
           P    DP YH   ++C     TW R
Sbjct: 502 PRLAVDPIYHMDVSNCNPSKPTWSR 526


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 130 RHRETPGRGLPYPP 171
           R  ETPGR LP+ P
Sbjct: 163 RANETPGRNLPFSP 176


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 11  KSYLKREVSPVQR*TIFD*KVVYLGRNSTSNM 106
           KSYLK E S +    ++D   +   + STS++
Sbjct: 21  KSYLKAEASSITAKQLYDASKITSSKRSTSDL 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,559,353
Number of Sequences: 5004
Number of extensions: 29958
Number of successful extensions: 79
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)