Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_M06
(386 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 8e-06
SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05) 32 0.19
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32) 30 0.76
SB_38790| Best HMM Match : E-MAP-115 (HMM E-Value=1.9) 29 1.8
SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05) 28 3.1
SB_52727| Best HMM Match : Plasmodium_HRP (HMM E-Value=2) 27 5.3
SB_37931| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05) 27 5.3
SB_22851| Best HMM Match : Sad1_UNC (HMM E-Value=0) 27 7.1
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.3
SB_4296| Best HMM Match : DUF1040 (HMM E-Value=0.24) 26 9.3
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054) 26 9.3
>SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 46.4 bits (105), Expect = 8e-06
Identities = 22/33 (66%), Positives = 27/33 (81%), Gaps = 2/33 (6%)
Frame = +2
Query: 194 RNVRSLEKV--CADLINGAKKQKLRVKGPVRMP 286
+ VR+ KV CADLI GAK++KL+VKGPVRMP
Sbjct: 6 KKVRTTRKVTVCADLIRGAKEKKLKVKGPVRMP 38
Score = 36.7 bits (81), Expect = 0.007
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +1
Query: 322 CGEGSKTWDRFQMRI 366
CGEGSKTWDR++MRI
Sbjct: 51 CGEGSKTWDRYEMRI 65
>SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05)
Length = 584
Score = 31.9 bits (69), Expect = 0.19
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 193 SQCALAREGLC*PNQWSQETEAACKGPSPHANQDPAYHHP 312
S C A GLC P + ++ + GPSP + DP+ P
Sbjct: 412 SICLCAPSGLCVPIHFLPNSDPSLAGPSPSSKLDPSIRDP 451
>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
Length = 2436
Score = 29.9 bits (64), Expect = 0.76
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 128 KDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCAD 229
+ + K Q E + IH + +T ++VRSLE+ C +
Sbjct: 663 RQLHKIQEESTRIHHLAVTALEKDVRSLEQRCLE 696
>SB_38790| Best HMM Match : E-MAP-115 (HMM E-Value=1.9)
Length = 198
Score = 28.7 bits (61), Expect = 1.8
Identities = 18/39 (46%), Positives = 21/39 (53%)
Frame = +1
Query: 106 GSRCSVRQRHRETPGRGLPYPPHQDHSYFSQCALAREGL 222
GSR R RHR PGR P P S+ ++ A AR GL
Sbjct: 2 GSRSHRRARHRGGPGRRRPLKP----SFTTEGAAARLGL 36
>SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 437
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Frame = +1
Query: 163 YPPHQDHSYFSQCALAR---EGLC*PNQWSQETEAACKGPSPHANQDPAYHHP 312
Y P +SY + CA + +G + A+ + PH N DPA+ P
Sbjct: 267 YDPQNPYSYGAYCAYTQAQPQGFNAQAYPYENNSASARPAMPHYNSDPAHTEP 319
>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
Length = 1878
Score = 27.9 bits (59), Expect = 3.1
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1
Query: 268 GPSPHANQDPAYHHP 312
GP PH+ Q P HHP
Sbjct: 1189 GPPPHSMQQPLLHHP 1203
>SB_52727| Best HMM Match : Plasmodium_HRP (HMM E-Value=2)
Length = 332
Score = 27.1 bits (57), Expect = 5.3
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 280 HANQDPAYHHP*NSCGEGSKTWDR 351
H+ + PA HH NS GEG R
Sbjct: 123 HSERQPAVHHTRNSQGEGQNILQR 146
>SB_37931| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 361
Score = 27.1 bits (57), Expect = 5.3
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 95 TSNMAAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEK 217
T N A+ ++S + +PQA + P+H I + SRN ++ K
Sbjct: 306 TLNSASVILS---LAEPQAGILPVHPHSIEIASRNRDAIAK 343
>SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)
Length = 1023
Score = 27.1 bits (57), Expect = 5.3
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 67 KSCLSRPEFNKQHGSRCS-VRQRHRETPGRGLPYPPHQ 177
+S ++ + +H S S V+ R+R G+G+ Y PHQ
Sbjct: 744 RSQINVTRYRPRHPSSTSTVKYRYRLWTGKGVDYQPHQ 781
>SB_22851| Best HMM Match : Sad1_UNC (HMM E-Value=0)
Length = 1705
Score = 26.6 bits (56), Expect = 7.1
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +2
Query: 59 FD*KVVYLGRNSTSNMAAAVVSGKD-IEKPQAEVSPIHRIRITLTSRNVRSLEK 217
FD K VYL RN+T+ AA+ S K+ I + QA +S + + +R + +L K
Sbjct: 1396 FD-KKVYLLRNATTKAEAAIKSQKEQISRLQARLSAMEEANENV-NRKLDTLNK 1447
>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4865
Score = 26.2 bits (55), Expect = 9.3
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +2
Query: 86 RNSTSNMAAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLING 241
++STSN + G PQ E +I T+ SR+ +EK + G
Sbjct: 2668 QSSTSNFKKSTSMGNLNRNPQEESRAKRKISDTVVSRSAAIVEKTSSGFYKG 2719
>SB_4296| Best HMM Match : DUF1040 (HMM E-Value=0.24)
Length = 227
Score = 26.2 bits (55), Expect = 9.3
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -2
Query: 340 FLNLHHXSFTGGDTQDLGWHADWALYTQLLFL 245
FLN S G + DL H DW YT+ L L
Sbjct: 181 FLNAAEVSIPGQNLSDLRQHLDW--YTEYLSL 210
>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
Length = 1079
Score = 26.2 bits (55), Expect = 9.3
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +2
Query: 83 GRNSTSNMAAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVR 205
G S SN + + D+E PQ ++ + + I + S+N++
Sbjct: 54 GSGSGSNSGSGSGAAADLEDPQTPLTHLRPLEILVPSKNLK 94
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,205,881
Number of Sequences: 59808
Number of extensions: 256127
Number of successful extensions: 539
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 669365910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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