Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_M06
(386 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132876-13|CAD21665.1| 117|Caenorhabditis elegans Hypothetical... 66 1e-11
AF003135-8|AAK18984.1| 235|Caenorhabditis elegans Hypothetical ... 28 2.0
AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical ... 28 2.6
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 27 3.5
U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily ass... 27 4.6
AF038609-2|AAK29794.1| 226|Caenorhabditis elegans Hypothetical ... 27 4.6
AF038609-1|AAO61425.1| 234|Caenorhabditis elegans Hypothetical ... 27 4.6
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 27 6.1
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 27 6.1
Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical pr... 26 8.1
Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical pr... 26 8.1
>AL132876-13|CAD21665.1| 117|Caenorhabditis elegans Hypothetical
protein Y105E8A.16 protein.
Length = 117
Score = 65.7 bits (153), Expect = 1e-11
Identities = 29/40 (72%), Positives = 35/40 (87%)
Frame = +2
Query: 167 HRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMP 286
HRIR+TLTS+NV+ LEKVCA LI+GAK + L VKGP+RMP
Sbjct: 17 HRIRLTLTSQNVKPLEKVCAQLIDGAKNEHLIVKGPIRMP 56
Score = 39.1 bits (87), Expect = 0.001
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +1
Query: 322 CGEGSKTWDRFQMRI 366
CGEGSKTWDRFQMRI
Sbjct: 69 CGEGSKTWDRFQMRI 83
>AF003135-8|AAK18984.1| 235|Caenorhabditis elegans Hypothetical
protein W03F11.1 protein.
Length = 235
Score = 28.3 bits (60), Expect = 2.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 127 QRHRETPGRGLPYPPHQDHSYFSQCA 204
Q HR PG +PYP DH+ F +C+
Sbjct: 84 QGHRCYPGTRIPYP--HDHTMFLECS 107
>AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical
protein F28B3.1 protein.
Length = 1539
Score = 27.9 bits (59), Expect = 2.6
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 140 KPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKK 250
+ +A+ SP HRI +TS+N C+ L+ A++
Sbjct: 943 RSRAQSSPDHRILTLVTSKNAEQDTATCSTLLKRAER 979
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 27.5 bits (58), Expect = 3.5
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Frame = +1
Query: 85 PEFNKQHGSRCSVRQRHRETPGRGL-PYPPHQDHSYF 192
P + H R R H G P+PPH H +F
Sbjct: 399 PPHHHHHDGRSPSRHGHHHHHHHGCRPFPPHHGHHHF 435
>U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily
assigned gene nameprotein 158 protein.
Length = 1003
Score = 27.1 bits (57), Expect = 4.6
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 207 ERTL-REVRVILMRWIGETSAWGFSMSLPDTTA 112
ERTL E R ++MR + + S G S+SLP A
Sbjct: 838 ERTLLMEERTMMMRDLQKVSGGGMSLSLPPANA 870
>AF038609-2|AAK29794.1| 226|Caenorhabditis elegans Hypothetical
protein C54E4.2a protein.
Length = 226
Score = 27.1 bits (57), Expect = 4.6
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 104 MAAAVVSGKDIEKPQAEVSPIH 169
++AA +S +D+EKP + P+H
Sbjct: 14 ISAAYISSEDLEKPSSADKPVH 35
>AF038609-1|AAO61425.1| 234|Caenorhabditis elegans Hypothetical
protein C54E4.2b protein.
Length = 234
Score = 27.1 bits (57), Expect = 4.6
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 104 MAAAVVSGKDIEKPQAEVSPIH 169
++AA +S +D+EKP + P+H
Sbjct: 14 ISAAYISSEDLEKPSSADKPVH 35
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 26.6 bits (56), Expect = 6.1
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 85 PEFNKQHGSRCSVRQRHRETPGRGL-PYPPHQDHSYF 192
P+ +QH ++ + Q H PG G P PP Q Y+
Sbjct: 654 PQQQQQHQAQQAQSQAHYGPPGGGQGPPPPPQGQQYY 690
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 26.6 bits (56), Expect = 6.1
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 85 PEFNKQHGSRCSVRQRHRETPGRGL-PYPPHQDHSYF 192
P+ +QH ++ + Q H PG G P PP Q Y+
Sbjct: 654 PQQQQQHQAQQAQSQAHYGPPGGGQGPPPPPQGQQYY 690
>Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical
protein R10E11.1b protein.
Length = 2056
Score = 26.2 bits (55), Expect = 8.1
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +1
Query: 163 YPPHQDHSYFSQCALAREGLC*PNQWSQETEAACKGPSPHANQDPAYHHP 312
YPP Q ++ F++ + G PN S + GPSP Q P P
Sbjct: 120 YPPGQQNA-FNRSPMMPNGT--PNMMSPPSMGRVPGPSPGGPQPPGPGQP 166
>Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical
protein R10E11.1a protein.
Length = 2045
Score = 26.2 bits (55), Expect = 8.1
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +1
Query: 163 YPPHQDHSYFSQCALAREGLC*PNQWSQETEAACKGPSPHANQDPAYHHP 312
YPP Q ++ F++ + G PN S + GPSP Q P P
Sbjct: 120 YPPGQQNA-FNRSPMMPNGT--PNMMSPPSMGRVPGPSPGGPQPPGPGQP 166
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,861,666
Number of Sequences: 27780
Number of extensions: 183489
Number of successful extensions: 421
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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