Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_M06
(386 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g47370.2 68416.m05151 40S ribosomal protein S20 (RPS20B) 40S ... 73 9e-14
At3g47370.1 68416.m05150 40S ribosomal protein S20 (RPS20B) 40S ... 73 9e-14
At5g62300.1 68418.m07821 40S ribosomal protein S20 (RPS20C) ribo... 71 4e-13
At3g45030.1 68416.m04851 40S ribosomal protein S20 (RPS20A) 40S ... 71 4e-13
At3g13120.1 68416.m01642 30S ribosomal protein S10, chloroplast,... 35 0.022
At3g06960.2 68416.m00827 expressed protein 28 2.5
At3g06960.1 68416.m00826 expressed protein 28 2.5
At5g27220.1 68418.m03247 protein transport protein-related low s... 27 4.4
At3g18310.1 68416.m02330 expressed protein 27 4.4
At3g60200.1 68416.m06726 expressed protein hypothetical proteins... 27 5.8
At3g22400.1 68416.m02826 lipoxygenase, putative similar to lipox... 26 7.6
At3g07130.1 68416.m00849 serine/threonine protein phosphatase fa... 26 7.6
>At3g47370.2 68416.m05151 40S ribosomal protein S20 (RPS20B) 40S
RIBOSOMAL PROTEIN S20 - ARABIDOPSIS
THALIANA,PID:g1350956
Length = 122
Score = 72.5 bits (170), Expect = 9e-14
Identities = 31/47 (65%), Positives = 41/47 (87%)
Frame = +2
Query: 146 QAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMP 286
+A + IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMP
Sbjct: 14 EAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60
Score = 33.1 bits (72), Expect = 0.067
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +1
Query: 322 CGEGSKTWDRFQMRI 366
CGEG+ TWDRF++R+
Sbjct: 73 CGEGTNTWDRFELRV 87
>At3g47370.1 68416.m05150 40S ribosomal protein S20 (RPS20B) 40S
RIBOSOMAL PROTEIN S20 - ARABIDOPSIS
THALIANA,PID:g1350956
Length = 122
Score = 72.5 bits (170), Expect = 9e-14
Identities = 31/47 (65%), Positives = 41/47 (87%)
Frame = +2
Query: 146 QAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMP 286
+A + IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMP
Sbjct: 14 EAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60
Score = 33.1 bits (72), Expect = 0.067
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +1
Query: 322 CGEGSKTWDRFQMRI 366
CGEG+ TWDRF++R+
Sbjct: 73 CGEGTNTWDRFELRV 87
>At5g62300.1 68418.m07821 40S ribosomal protein S20 (RPS20C)
ribosomal protein S20, Arabidopsis thaliana, PIR:T12992
Length = 124
Score = 70.5 bits (165), Expect = 4e-13
Identities = 30/41 (73%), Positives = 38/41 (92%)
Frame = +2
Query: 164 IHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMP 286
IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMP
Sbjct: 22 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 62
Score = 33.1 bits (72), Expect = 0.067
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +1
Query: 322 CGEGSKTWDRFQMRI 366
CGEG+ TWDRF++R+
Sbjct: 75 CGEGTNTWDRFELRV 89
>At3g45030.1 68416.m04851 40S ribosomal protein S20 (RPS20A) 40S
ribsomomal proteinS20, Arabidopsis thaliana, pir:T12992
Length = 124
Score = 70.5 bits (165), Expect = 4e-13
Identities = 30/41 (73%), Positives = 38/41 (92%)
Frame = +2
Query: 164 IHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMP 286
IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGPVRMP
Sbjct: 22 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 62
Score = 33.1 bits (72), Expect = 0.067
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +1
Query: 322 CGEGSKTWDRFQMRI 366
CGEG+ TWDRF++R+
Sbjct: 75 CGEGTNTWDRFELRV 89
>At3g13120.1 68416.m01642 30S ribosomal protein S10, chloroplast,
putative similar to 30S ribosomal protein S10 GB:P02364
[Escherichia coli] (est matches suggest the N-terminal
extension)
Length = 191
Score = 34.7 bits (76), Expect = 0.022
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +2
Query: 107 AAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMP 286
A+ V S I +++P +IRI L S V +E C +++ A+ + GPV +P
Sbjct: 73 ASEVPSSSSISVDADKMAPKQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLP 132
>At3g06960.2 68416.m00827 expressed protein
Length = 341
Score = 27.9 bits (59), Expect = 2.5
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 174 MRWIGETSAWGFSMSLPDT 118
MRW+GE W MS P T
Sbjct: 4 MRWVGEGDIWDLDMSTPVT 22
>At3g06960.1 68416.m00826 expressed protein
Length = 479
Score = 27.9 bits (59), Expect = 2.5
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 174 MRWIGETSAWGFSMSLPDT 118
MRW+GE W MS P T
Sbjct: 4 MRWVGEGDIWDLDMSTPVT 22
>At5g27220.1 68418.m03247 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1181
Score = 27.1 bits (57), Expect = 4.4
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
Frame = -2
Query: 214 LERAH--IARSKSDPDAVDRGDLCL 146
++R H +A +K DPD+V RG +CL
Sbjct: 691 IQRLHEKMAVTKLDPDSVRRGSICL 715
>At3g18310.1 68416.m02330 expressed protein
Length = 873
Score = 27.1 bits (57), Expect = 4.4
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +1
Query: 238 WSQETEAACKGPSPHANQDPA 300
W+ +++ C GPSP +DP+
Sbjct: 400 WNAQSQMFCFGPSPSVGKDPS 420
>At3g60200.1 68416.m06726 expressed protein hypothetical proteins
At2g44600 - Arabidopsis thaliana, EMBL:AAC27462
Length = 305
Score = 26.6 bits (56), Expect = 5.8
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -1
Query: 167 G*GRPLPGVSRCLCLTLQRLPCCLLNSGR--DKQLFNQKLFSAEPEKPHVSS 18
G G+ + G++ CL ++ P C + N +A PEKPH+S+
Sbjct: 232 GIGKSMSGMAFCLSPLVRASPNCPFKRKMRFPSEFGNSGEVTAVPEKPHISA 283
>At3g22400.1 68416.m02826 lipoxygenase, putative similar to
lipoxygenase gi:8649004 [Prunus dulcis], gi:1495802 and
gi:1495804 from [Solanum tuberosum]
Length = 886
Score = 26.2 bits (55), Expect = 7.6
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 43 SALNNF*LKSCLSRPEFNKQHGSRCSVRQRHRETPGRGL 159
S L F KSCL ++ QH S+R H E+ GL
Sbjct: 402 SRLQEFPPKSCLDSAKYGNQHS---SIRTEHIESNMNGL 437
>At3g07130.1 68416.m00849 serine/threonine protein phosphatase
family protein contains similarity to purple acid
phosphatase [Arabidopsis thaliana]
gi|20257489|gb|AAM15914
Length = 532
Score = 26.2 bits (55), Expect = 7.6
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -3
Query: 255 FCFLAPLIRSAQTFSSERTLREVRVILMRWIGETSAWGFSMSLPDT 118
FCFL+P I SA + S V V + +TS G ++ LPDT
Sbjct: 9 FCFLSPAISSAHSIPSTLDGPFVPVTVPL---DTSLRGQAIDLPDT 51
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,448,001
Number of Sequences: 28952
Number of extensions: 173204
Number of successful extensions: 416
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 547638520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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