Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_M04
(639 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18229| Best HMM Match : RVT_1 (HMM E-Value=0.82) 32 0.45
SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.60
SB_46703| Best HMM Match : Extensin_2 (HMM E-Value=1.4) 30 1.8
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_58058| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_44452| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0) 27 9.7
>SB_18229| Best HMM Match : RVT_1 (HMM E-Value=0.82)
Length = 458
Score = 31.9 bits (69), Expect = 0.45
Identities = 18/78 (23%), Positives = 32/78 (41%)
Frame = +2
Query: 203 DDFEHLDRETKQDPADSPVHHHRVATQSFLEMERGPAAEHRPPSVAEKLMDHMADKFTDS 382
D+ + R K AD+ H + + R PA P + ++ +K
Sbjct: 369 DETDETTRPAKNKRADAATHQEEI--EMHCPHPRRPAKPAMPTTHKQQQQQQQQEKQPSK 426
Query: 383 ESDADTAGESPLHRPEPR 436
++ TA + P+H+PE R
Sbjct: 427 KAPEITAQDGPVHQPEQR 444
>SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 881
Score = 31.5 bits (68), Expect = 0.60
Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 10/93 (10%)
Frame = +2
Query: 197 STDDFEHLDRETKQDPADSPVHHHRVATQSFLEMER--------GPAAEHRPPSVAEKLM 352
S D + R P S V H V Q++++ E+ A EHRP K
Sbjct: 595 SCDAPPDMPRHGVPPPHPSSVPHQPVVKQAWVQPEQQVVYKAASDQAKEHRPVDRPTKGQ 654
Query: 353 DH--MADKFTDSESDADTAGESPLHRPEPRVEL 445
MA K T +++ ESPLH P PR L
Sbjct: 655 RDKTMAVKSTKTQTSPQEYRESPLHTPLPRKRL 687
>SB_46703| Best HMM Match : Extensin_2 (HMM E-Value=1.4)
Length = 564
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +2
Query: 263 HHRVATQSFLEMERGPAAEHRP-PSVAEKLMDHMADKFTDSESDADTAGESPLHRPEPRV 439
+HR + QS + G HRP P V + D + +++D +S T G HRP+P+V
Sbjct: 427 NHRYSDQS-QTLTTGIPISHRPQPQVFRSVTD-LNHRYSD-QSQTSTTGIPISHRPQPQV 483
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +2
Query: 263 HHRVATQSFLEMERGPAAEHRP-PSVAEKLMDHMADKFTDSESDADTAGESPLHRPEPRV 439
+HR + QS P + HRP P V + + D + +++D +S T G HRP+P+V
Sbjct: 363 NHRYSDQSQTSTTGIPIS-HRPQPQVFQSVTD-LNHRYSD-QSQTSTTGIPISHRPQPQV 419
Score = 27.9 bits (59), Expect = 7.4
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +2
Query: 263 HHRVATQSFLEMERGPAAEHRP-PSVAEKLMDHMADKFTDSESDADTAGESPLHRPEPRV 439
+HR + QS P + HRP P V + D + +++D +S T G HRP+P+V
Sbjct: 331 NHRYSDQSQTSTIGIPIS-HRPQPQVFRSVTD-LNHRYSD-QSQTSTTGIPISHRPQPQV 387
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Frame = +2
Query: 215 HLDRETKQDPADSPVHHHRVATQSFLEMERGPAAEHRPPSVAEKLM---DHMADKFTDSE 385
H K+D DSPV ++ E ++ E PP K M + ++SE
Sbjct: 739 HRSEYKKRDVQDSPVRQPSLSPSPSPERKKEDPKEKSPPLPKSKKMANRSYRKHNSSESE 798
Query: 386 SDADTAGESPLHRPEPR 436
SD+D+ E PR
Sbjct: 799 SDSDSPPERKKGSVSPR 815
>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 27.9 bits (59), Expect = 7.4
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +2
Query: 191 QDSTDDFEHLDRETKQDPADSPVHHHRVATQ 283
+D +D E + E +++ +SPVHH ++ +
Sbjct: 171 EDDLEDMESEEEEEEEEHKESPVHHRSLSPE 201
>SB_58058| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 374
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Frame = +2
Query: 203 DDFEHLDRETKQDPADSPVHHHRVATQSFLEMERGPAAEHRPPS-VAEKLMDHMADKFTD 379
D+ + R K AD+ H + + R PA P + ++ +K
Sbjct: 284 DETDETTRPAKNKRADAATHQEEI--EMHCPHPRRPAKPAMPTTHKQQQQQQQQQEKQPS 341
Query: 380 SESDADTAGESPLHRPEPR 436
++ TA + P+H+PE R
Sbjct: 342 KKAPEITAQDGPVHQPEQR 360
>SB_44452| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 308
Score = 27.5 bits (58), Expect = 9.7
Identities = 19/57 (33%), Positives = 24/57 (42%)
Frame = +3
Query: 330 LPSPKSLWTTWPTNLPTVSQTPILQESRPSIGPSRGSNSRSLALRHRNHRCLKLTTR 500
+PSP SL T P L TP Q P R S SR + +N R + + R
Sbjct: 90 IPSPPSLSTLSPLALSPPVSTPRQQRHTPPSFTPRSSISRRRSDTPKNRRRISVPRR 146
>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1449
Score = 27.5 bits (58), Expect = 9.7
Identities = 20/78 (25%), Positives = 32/78 (41%)
Frame = +2
Query: 182 KRDQDSTDDFEHLDRETKQDPADSPVHHHRVATQSFLEMERGPAAEHRPPSVAEKLMDHM 361
KR + DD+ H+D++ + D P +Q + E G RP A+ H
Sbjct: 219 KRSAEDYDDYYHMDKQVCHEQGDDP--RVSPTSQQYACGECGKTFA-RPTWWAKHESAHN 275
Query: 362 ADKFTDSESDADTAGESP 415
+ + S + T ESP
Sbjct: 276 CKRASPSARSSPTPSESP 293
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,877,223
Number of Sequences: 59808
Number of extensions: 380216
Number of successful extensions: 1252
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1251
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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