BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fprWP01_F_M04 (639 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z67738-2|CAA91546.2| 482|Caenorhabditis elegans Hypothetical pr... 31 0.70 Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 31 0.92 AF077531-1|AAC64610.1| 374|Caenorhabditis elegans Hypothetical ... 31 0.92 U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical p... 30 1.2 U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 29 2.1 U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 29 2.1 Z70203-2|CAA94105.1| 685|Caenorhabditis elegans Hypothetical pr... 29 3.7 U80437-19|AAB37630.2| 580|Caenorhabditis elegans Conserved olig... 28 4.9 U29614-2|AAM54190.1| 1020|Caenorhabditis elegans Temporarily ass... 27 8.6 U29614-1|AAM54191.1| 1061|Caenorhabditis elegans Temporarily ass... 27 8.6 >Z67738-2|CAA91546.2| 482|Caenorhabditis elegans Hypothetical protein W03G11.3 protein. Length = 482 Score = 31.1 bits (67), Expect = 0.70 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 3/27 (11%) Frame = +3 Query: 252 HRYTIIAWPLRVSWRWN---VGPQRNI 323 H WP R SW WN +GP+R+I Sbjct: 120 HHEGFTMWPSRTSWNWNSMDIGPKRDI 146 >Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein W01F3.3 protein. Length = 2175 Score = 30.7 bits (66), Expect = 0.92 Identities = 17/59 (28%), Positives = 25/59 (42%) Frame = -2 Query: 416 GATLLQYRRLTHCR*ICRPCGP*AFRRRKAADVPLRAHVPSPRNSEWPRDDGVPVNPPG 240 G Q+ L+ C IC P GP + P A V P ++ P+ +P+ PG Sbjct: 1321 GGNTNQFETLSECERICTPSGP---KTPTLPPTPTPATVAVPVPAQTPKVPQLPIGAPG 1376 >AF077531-1|AAC64610.1| 374|Caenorhabditis elegans Hypothetical protein F13C5.2 protein. Length = 374 Score = 30.7 bits (66), Expect = 0.92 Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 4/90 (4%) Frame = +2 Query: 182 KRDQDSTDDFEHLDRETKQDPADS----PVHHHRVATQSFLEMERGPAAEHRPPSVAEKL 349 K ++D D+ E + E D D V H A+ S P A+H ++ E Sbjct: 277 KEEEDHEDEREEQEEEDSSDEEDGLDDDDVRRHIPASTS------APVAKHPEAAMPEPA 330 Query: 350 MDHMADKFTDSESDADTAGESPLHRPEPRV 439 +H + + +++++ + +G P+H E + Sbjct: 331 AEHSSIQSSEAQALGEISGAHPIHIGESEI 360 >U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical protein B0336.3 protein. Length = 719 Score = 30.3 bits (65), Expect = 1.2 Identities = 15/35 (42%), Positives = 18/35 (51%) Frame = +1 Query: 235 TRPGGFTGTPSSRGHSEFLGDGTWARSGTSAAFRR 339 T+PG F G P RG G G +AR G + A R Sbjct: 331 TQPGSFRGAP--RGRGNIRGRGGFARGGFTGAINR 363 >U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated protein 44, isoform f protein. Length = 6994 Score = 29.5 bits (63), Expect = 2.1 Identities = 14/58 (24%), Positives = 25/58 (43%) Frame = +2 Query: 173 QTMKRDQDSTDDFEHLDRETKQDPADSPVHHHRVATQSFLEMERGPAAEHRPPSVAEK 346 +++K ++S + F E +QD +DSP+H + F + P EK Sbjct: 3946 ESLKSPKESGEAFSQFTSEKEQDRSDSPIHSQKEDISQFQNESSPEDVKSEQPHDEEK 4003 >U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin protein. Length = 6994 Score = 29.5 bits (63), Expect = 2.1 Identities = 14/58 (24%), Positives = 25/58 (43%) Frame = +2 Query: 173 QTMKRDQDSTDDFEHLDRETKQDPADSPVHHHRVATQSFLEMERGPAAEHRPPSVAEK 346 +++K ++S + F E +QD +DSP+H + F + P EK Sbjct: 3946 ESLKSPKESGEAFSQFTSEKEQDRSDSPIHSQKEDISQFQNESSPEDVKSEQPHDEEK 4003 >Z70203-2|CAA94105.1| 685|Caenorhabditis elegans Hypothetical protein C05G5.2 protein. Length = 685 Score = 28.7 bits (61), Expect = 3.7 Identities = 17/57 (29%), Positives = 30/57 (52%) Frame = +2 Query: 260 HHHRVATQSFLEMERGPAAEHRPPSVAEKLMDHMADKFTDSESDADTAGESPLHRPE 430 H+ ++ ++S + +E+GP SV ++ +A K +SD+DT E PL E Sbjct: 256 HNEKLVSESAMPIEKGPTRPAAMASVIGEMKKKVAAKAKLLDSDSDTDRE-PLGSSE 311 >U80437-19|AAB37630.2| 580|Caenorhabditis elegans Conserved oligomeric golgi (cog)component protein 5 protein. Length = 580 Score = 28.3 bits (60), Expect = 4.9 Identities = 19/62 (30%), Positives = 28/62 (45%) Frame = +2 Query: 212 EHLDRETKQDPADSPVHHHRVATQSFLEMERGPAAEHRPPSVAEKLMDHMADKFTDSESD 391 E +D ET Q+ +DSP + T+ +E+E G E P D +K + E D Sbjct: 172 EKVDAETAQE-SDSPQEAEKEKTEPQVELENGGQEEDEPD------RDESIEKQPEKEDD 224 Query: 392 AD 397 D Sbjct: 225 GD 226 >U29614-2|AAM54190.1| 1020|Caenorhabditis elegans Temporarily assigned gene nameprotein 279, isoform a protein. Length = 1020 Score = 27.5 bits (58), Expect = 8.6 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = -2 Query: 323 DVPLRAHVPSPRNSEWPRDDGVPVNPPGLV 234 D+ +R VP P+ E R VP NPP L+ Sbjct: 462 DLTIRVVVP-PKRREGKRKSEVPANPPALL 490 >U29614-1|AAM54191.1| 1061|Caenorhabditis elegans Temporarily assigned gene nameprotein 279, isoform b protein. Length = 1061 Score = 27.5 bits (58), Expect = 8.6 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = -2 Query: 323 DVPLRAHVPSPRNSEWPRDDGVPVNPPGLV 234 D+ +R VP P+ E R VP NPP L+ Sbjct: 503 DLTIRVVVP-PKRREGKRKSEVPANPPALL 531 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,406,875 Number of Sequences: 27780 Number of extensions: 256921 Number of successful extensions: 869 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 838 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 868 length of database: 12,740,198 effective HSP length: 78 effective length of database: 10,573,358 effective search space used: 1416829972 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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