Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_M04
(639 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z67738-2|CAA91546.2| 482|Caenorhabditis elegans Hypothetical pr... 31 0.70
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 31 0.92
AF077531-1|AAC64610.1| 374|Caenorhabditis elegans Hypothetical ... 31 0.92
U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical p... 30 1.2
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 29 2.1
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 29 2.1
Z70203-2|CAA94105.1| 685|Caenorhabditis elegans Hypothetical pr... 29 3.7
U80437-19|AAB37630.2| 580|Caenorhabditis elegans Conserved olig... 28 4.9
U29614-2|AAM54190.1| 1020|Caenorhabditis elegans Temporarily ass... 27 8.6
U29614-1|AAM54191.1| 1061|Caenorhabditis elegans Temporarily ass... 27 8.6
>Z67738-2|CAA91546.2| 482|Caenorhabditis elegans Hypothetical
protein W03G11.3 protein.
Length = 482
Score = 31.1 bits (67), Expect = 0.70
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Frame = +3
Query: 252 HRYTIIAWPLRVSWRWN---VGPQRNI 323
H WP R SW WN +GP+R+I
Sbjct: 120 HHEGFTMWPSRTSWNWNSMDIGPKRDI 146
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
W01F3.3 protein.
Length = 2175
Score = 30.7 bits (66), Expect = 0.92
Identities = 17/59 (28%), Positives = 25/59 (42%)
Frame = -2
Query: 416 GATLLQYRRLTHCR*ICRPCGP*AFRRRKAADVPLRAHVPSPRNSEWPRDDGVPVNPPG 240
G Q+ L+ C IC P GP + P A V P ++ P+ +P+ PG
Sbjct: 1321 GGNTNQFETLSECERICTPSGP---KTPTLPPTPTPATVAVPVPAQTPKVPQLPIGAPG 1376
>AF077531-1|AAC64610.1| 374|Caenorhabditis elegans Hypothetical
protein F13C5.2 protein.
Length = 374
Score = 30.7 bits (66), Expect = 0.92
Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Frame = +2
Query: 182 KRDQDSTDDFEHLDRETKQDPADS----PVHHHRVATQSFLEMERGPAAEHRPPSVAEKL 349
K ++D D+ E + E D D V H A+ S P A+H ++ E
Sbjct: 277 KEEEDHEDEREEQEEEDSSDEEDGLDDDDVRRHIPASTS------APVAKHPEAAMPEPA 330
Query: 350 MDHMADKFTDSESDADTAGESPLHRPEPRV 439
+H + + +++++ + +G P+H E +
Sbjct: 331 AEHSSIQSSEAQALGEISGAHPIHIGESEI 360
>U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical
protein B0336.3 protein.
Length = 719
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 235 TRPGGFTGTPSSRGHSEFLGDGTWARSGTSAAFRR 339
T+PG F G P RG G G +AR G + A R
Sbjct: 331 TQPGSFRGAP--RGRGNIRGRGGFARGGFTGAINR 363
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/58 (24%), Positives = 25/58 (43%)
Frame = +2
Query: 173 QTMKRDQDSTDDFEHLDRETKQDPADSPVHHHRVATQSFLEMERGPAAEHRPPSVAEK 346
+++K ++S + F E +QD +DSP+H + F + P EK
Sbjct: 3946 ESLKSPKESGEAFSQFTSEKEQDRSDSPIHSQKEDISQFQNESSPEDVKSEQPHDEEK 4003
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/58 (24%), Positives = 25/58 (43%)
Frame = +2
Query: 173 QTMKRDQDSTDDFEHLDRETKQDPADSPVHHHRVATQSFLEMERGPAAEHRPPSVAEK 346
+++K ++S + F E +QD +DSP+H + F + P EK
Sbjct: 3946 ESLKSPKESGEAFSQFTSEKEQDRSDSPIHSQKEDISQFQNESSPEDVKSEQPHDEEK 4003
>Z70203-2|CAA94105.1| 685|Caenorhabditis elegans Hypothetical
protein C05G5.2 protein.
Length = 685
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +2
Query: 260 HHHRVATQSFLEMERGPAAEHRPPSVAEKLMDHMADKFTDSESDADTAGESPLHRPE 430
H+ ++ ++S + +E+GP SV ++ +A K +SD+DT E PL E
Sbjct: 256 HNEKLVSESAMPIEKGPTRPAAMASVIGEMKKKVAAKAKLLDSDSDTDRE-PLGSSE 311
>U80437-19|AAB37630.2| 580|Caenorhabditis elegans Conserved
oligomeric golgi (cog)component protein 5 protein.
Length = 580
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = +2
Query: 212 EHLDRETKQDPADSPVHHHRVATQSFLEMERGPAAEHRPPSVAEKLMDHMADKFTDSESD 391
E +D ET Q+ +DSP + T+ +E+E G E P D +K + E D
Sbjct: 172 EKVDAETAQE-SDSPQEAEKEKTEPQVELENGGQEEDEPD------RDESIEKQPEKEDD 224
Query: 392 AD 397
D
Sbjct: 225 GD 226
>U29614-2|AAM54190.1| 1020|Caenorhabditis elegans Temporarily
assigned gene nameprotein 279, isoform a protein.
Length = 1020
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 323 DVPLRAHVPSPRNSEWPRDDGVPVNPPGLV 234
D+ +R VP P+ E R VP NPP L+
Sbjct: 462 DLTIRVVVP-PKRREGKRKSEVPANPPALL 490
>U29614-1|AAM54191.1| 1061|Caenorhabditis elegans Temporarily
assigned gene nameprotein 279, isoform b protein.
Length = 1061
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 323 DVPLRAHVPSPRNSEWPRDDGVPVNPPGLV 234
D+ +R VP P+ E R VP NPP L+
Sbjct: 503 DLTIRVVVP-PKRREGKRKSEVPANPPALL 531
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,406,875
Number of Sequences: 27780
Number of extensions: 256921
Number of successful extensions: 869
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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