Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_M03
         (433 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38468| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.5e-23)         76   1e-14
SB_38972| Best HMM Match : PIP5K (HMM E-Value=0)                       30   0.93 
SB_42837| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  

>SB_38468| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.5e-23)
          Length = 131

 Score = 76.2 bits (179), Expect = 1e-14
 Identities = 41/82 (50%), Positives = 48/82 (58%)
 Frame = +1

Query: 52  KVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYH 231
           KVK  ELR K                + LRVAKVTGG ASKLSKI+VVRK++ARV  V  
Sbjct: 11  KVKAHELRGKKKDELLKQLDELKTELSQLRVAKVTGGAASKLSKIKVVRKSVARVLTVVS 70

Query: 232 QKMKVNLRNHYKNKKYKPLXFK 297
           Q  + NLR  Y+ KKY PL  +
Sbjct: 71  QTQRDNLRKFYRKKKYLPLDLR 92



 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 22/39 (56%), Positives = 27/39 (69%)
 Frame = +2

Query: 296 RAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVK 412
           R K TRAMR++LTK EA  KT K+ +K + F  R YAVK
Sbjct: 92  RPKLTRAMRRSLTKKEASSKTLKQQKKLAHFSLRKYAVK 130


>SB_38972| Best HMM Match : PIP5K (HMM E-Value=0)
          Length = 426

 Score = 29.9 bits (64), Expect = 0.93
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +1

Query: 199 KAIARVYIVYHQKMKVNLRNHYKNKKYKPLXFKS 300
           KA ++V +  H   K NL +H+K K+Y P+ F++
Sbjct: 70  KAYSKVRVDNHLFNKENLPSHFKFKEYCPMVFRN 103


>SB_42837| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +1

Query: 232 QKMKVNLRNHYKNKKYKPLXFKSQEDPCYAQGSY*TRSKDQDEERDQKE 378
           +K K N +N  KNKK K +  K +E+    + +    ++++  E  +KE
Sbjct: 37  KKNKKNKKNKNKNKKKKKMKKKKEEEAEVGEKTLEAENEEEKIEETEKE 85


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,326,433
Number of Sequences: 59808
Number of extensions: 155596
Number of successful extensions: 395
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)