Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_M03
         (433 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14429-5|AAA28216.1|  123|Caenorhabditis elegans Ribosomal prote...    73   1e-13
Z70718-6|CAA94677.1| 1029|Caenorhabditis elegans Hypothetical pr...    28   3.3  
AL033536-3|CAA22142.1| 1564|Caenorhabditis elegans Hypothetical ...    28   3.3  
Z81588-4|CAB04713.1|  413|Caenorhabditis elegans Hypothetical pr...    27   7.7  
U97404-2|AAB93309.1|  795|Caenorhabditis elegans Acid-sensing/am...    27   7.7  
AL031624-1|CAA20940.1|  413|Caenorhabditis elegans Hypothetical ...    27   7.7  

>L14429-5|AAA28216.1|  123|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 35 protein.
          Length = 123

 Score = 72.5 bits (170), Expect = 1e-13
 Identities = 39/84 (46%), Positives = 47/84 (55%)
 Frame = +1

Query: 46  MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 225
           M K+KC  LR +                  LRV+KVTGG ASKLSKIRVVRK IAR+  V
Sbjct: 1   MTKLKCKSLRGEKKDALQKKLDEQKTELATLRVSKVTGGAASKLSKIRVVRKNIARLLTV 60

Query: 226 YHQKMKVNLRNHYKNKKYKPLXFK 297
            +Q  K  LR  Y + KYKP+  +
Sbjct: 61  INQTQKQELRKFYADHKYKPIDLR 84



 Score = 36.3 bits (80), Expect = 0.009
 Identities = 18/40 (45%), Positives = 25/40 (62%)
 Frame = +2

Query: 296 RAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVKA 415
           R KKTRA+R+ LT HE  +++ K+  K      R +AVKA
Sbjct: 84  RLKKTRAIRRRLTAHELSLRSAKQQAKSRNQAVRKFAVKA 123


>Z70718-6|CAA94677.1| 1029|Caenorhabditis elegans Hypothetical
           protein C04G2.6 protein.
          Length = 1029

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 205 IARVYIVYHQKMKVNLRNHYKNKKYKPLXFKSQEDP 312
           +A V +V+ +  K  + NHY++  Y     ++ EDP
Sbjct: 174 VAPVVLVFDEDSKKRMENHYQHVMYLKEYIQNLEDP 209


>AL033536-3|CAA22142.1| 1564|Caenorhabditis elegans Hypothetical
           protein Y53C10A.9 protein.
          Length = 1564

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
 Frame = +1

Query: 214 VYIVYHQKMKVNLRNHYKNKKY-----KPLXFKSQEDPCYAQGSY*T 339
           ++++ H KM  +   HY  +KY       L FKS  DP   + SY T
Sbjct: 652 IFVMSHGKMAASGSKHYLKQKYGGGMLLTLVFKSVHDPMRPRKSYET 698


>Z81588-4|CAB04713.1|  413|Caenorhabditis elegans Hypothetical
           protein T07D10.4 protein.
          Length = 413

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 397 SRWEERFLSDLFPRLDLCFVFSKSLAHSTGL 305
           S W+   +  +FPR+D C   S    + TG+
Sbjct: 232 SAWDYSDIDPIFPRVDYCLKMSAFNGYPTGM 262


>U97404-2|AAB93309.1|  795|Caenorhabditis elegans
           Acid-sensing/amiloride-sensitiveion channel family
           protein 1 protein.
          Length = 795

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 427 IIYSSFNGIDSRWEERFLSDLFPRLDLCFVFSKSLAHST 311
           I+  SFNG +   +  F+  L P    CF + + L ++T
Sbjct: 463 IMKCSFNGRECNVKHDFVEYLDPTYGACFTYGQKLGNNT 501


>AL031624-1|CAA20940.1|  413|Caenorhabditis elegans Hypothetical
           protein H16D19.1 protein.
          Length = 413

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 397 SRWEERFLSDLFPRLDLCFVFSKSLAHSTGL 305
           S W+   +  +FPR+D C   S    + TG+
Sbjct: 232 SAWDYSDIDPIFPRVDYCLKMSAFNGYPTGM 262


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,682,537
Number of Sequences: 27780
Number of extensions: 114814
Number of successful extensions: 333
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)