Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_M03
(433 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02610.1 68418.m00197 60S ribosomal protein L35 (RPL35D) ribo... 73 8e-14
At3g55170.2 68416.m06128 60S ribosomal protein L35 (RPL35C) vari... 73 8e-14
At3g55170.1 68416.m06127 60S ribosomal protein L35 (RPL35C) vari... 73 8e-14
At2g39390.1 68415.m04834 60S ribosomal protein L35 (RPL35B) 73 8e-14
At3g09500.1 68416.m01129 60S ribosomal protein L35 (RPL35A) simi... 73 1e-13
At4g14350.2 68417.m02211 protein kinase family protein contains ... 27 4.1
At4g14350.1 68417.m02210 protein kinase family protein contains ... 27 4.1
At1g01340.1 68414.m00049 cyclic nucleotide-regulated ion channel... 27 4.1
At1g63980.1 68414.m07247 D111/G-patch domain-containing protein ... 27 5.5
At5g15020.1 68418.m01761 paired amphipathic helix repeat-contain... 27 7.2
>At5g02610.1 68418.m00197 60S ribosomal protein L35 (RPL35D)
ribosomal protein L35- cytosolic, Arabidopsis thaliana,
PIR:T00549
Length = 123
Score = 72.9 bits (171), Expect = 8e-14
Identities = 44/115 (38%), Positives = 59/115 (51%)
Frame = +1
Query: 46 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 225
M ++K ELR K LRVAKVTGG +KLSKI+VVRK+IA+V V
Sbjct: 1 MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 226 YHQKMKVNLRNHYKNKKYKPLXFKSQEDPCYAQGSY*TRSKDQDEERDQKEISLP 390
QK K LR YKNKK PL + ++ + ++ + E +KE+ P
Sbjct: 61 ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFP 115
Score = 51.6 bits (118), Expect = 2e-07
Identities = 22/39 (56%), Positives = 30/39 (76%)
Frame = +2
Query: 296 RAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVK 412
R KKTRA+R+ LTKH+A +KT +E +K+ FP R YA+K
Sbjct: 84 RPKKTRAIRRRLTKHQASLKTEREKKKEMYFPVRKYAIK 122
>At3g55170.2 68416.m06128 60S ribosomal protein L35 (RPL35C) various
ribosomal L35 proteins
Length = 123
Score = 72.9 bits (171), Expect = 8e-14
Identities = 40/87 (45%), Positives = 50/87 (57%)
Frame = +1
Query: 46 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 225
M ++K ELR K +LRVAKVTGG +KLSKI+VVRK+IA+V V
Sbjct: 1 MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 226 YHQKMKVNLRNHYKNKKYKPLXFKSQE 306
QK K LR YKNKK PL + ++
Sbjct: 61 SSQKQKSALREAYKNKKLLPLDLRPKK 87
Score = 50.4 bits (115), Expect = 5e-07
Identities = 22/39 (56%), Positives = 29/39 (74%)
Frame = +2
Query: 296 RAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVK 412
R KKTRA+R+ LTKH+A +KT +E +K FP R YA+K
Sbjct: 84 RPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYAIK 122
>At3g55170.1 68416.m06127 60S ribosomal protein L35 (RPL35C) various
ribosomal L35 proteins
Length = 123
Score = 72.9 bits (171), Expect = 8e-14
Identities = 40/87 (45%), Positives = 50/87 (57%)
Frame = +1
Query: 46 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 225
M ++K ELR K +LRVAKVTGG +KLSKI+VVRK+IA+V V
Sbjct: 1 MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 226 YHQKMKVNLRNHYKNKKYKPLXFKSQE 306
QK K LR YKNKK PL + ++
Sbjct: 61 SSQKQKSALREAYKNKKLLPLDLRPKK 87
Score = 50.4 bits (115), Expect = 5e-07
Identities = 22/39 (56%), Positives = 29/39 (74%)
Frame = +2
Query: 296 RAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVK 412
R KKTRA+R+ LTKH+A +KT +E +K FP R YA+K
Sbjct: 84 RPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYAIK 122
>At2g39390.1 68415.m04834 60S ribosomal protein L35 (RPL35B)
Length = 123
Score = 72.9 bits (171), Expect = 8e-14
Identities = 44/115 (38%), Positives = 59/115 (51%)
Frame = +1
Query: 46 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 225
M ++K ELR K LRVAKVTGG +KLSKI+VVRK+IA+V V
Sbjct: 1 MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 226 YHQKMKVNLRNHYKNKKYKPLXFKSQEDPCYAQGSY*TRSKDQDEERDQKEISLP 390
QK K LR YKNKK PL + ++ + ++ + E +KE+ P
Sbjct: 61 ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFP 115
Score = 51.2 bits (117), Expect = 3e-07
Identities = 22/39 (56%), Positives = 30/39 (76%)
Frame = +2
Query: 296 RAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVK 412
R KKTRA+R+ LTKH+A +KT +E +K+ FP R YA+K
Sbjct: 84 RPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYAIK 122
>At3g09500.1 68416.m01129 60S ribosomal protein L35 (RPL35A) similar
to 60S ribosomal protein L35 GB:AAC27830
Length = 123
Score = 72.5 bits (170), Expect = 1e-13
Identities = 44/115 (38%), Positives = 59/115 (51%)
Frame = +1
Query: 46 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 225
M ++K ELR K LRVAKVTGG +KLSKI+VVRK+IA+V V
Sbjct: 1 MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 226 YHQKMKVNLRNHYKNKKYKPLXFKSQEDPCYAQGSY*TRSKDQDEERDQKEISLP 390
QK K LR YKNKK PL + ++ + ++ + E +KE+ P
Sbjct: 61 SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFP 115
Score = 51.2 bits (117), Expect = 3e-07
Identities = 22/39 (56%), Positives = 30/39 (76%)
Frame = +2
Query: 296 RAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVK 412
R KKTRA+R+ LTKH+A +KT +E +K+ FP R YA+K
Sbjct: 84 RPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYAIK 122
>At4g14350.2 68417.m02211 protein kinase family protein contains
similarity to Swiss-Prot:O13310 serine/threonine-protein
kinase orb6 [Schizosaccharomyces pombe]
Length = 551
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 130 TNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKK 276
+N++ T G LS I + A A++YI H KM++ K ++
Sbjct: 27 SNVKEGPKTAGGEEALSNITKEKAAAAKLYIENHYKMQMQSLQERKERR 75
>At4g14350.1 68417.m02210 protein kinase family protein contains
similarity to Swiss-Prot:O13310 serine/threonine-protein
kinase orb6 [Schizosaccharomyces pombe]
Length = 551
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 130 TNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKK 276
+N++ T G LS I + A A++YI H KM++ K ++
Sbjct: 27 SNVKEGPKTAGGEEALSNITKEKAAAAKLYIENHYKMQMQSLQERKERR 75
>At1g01340.1 68414.m00049 cyclic nucleotide-regulated ion channel
(CNGC10) (ACBK1) almost identical to CaM-regulated
potassium ion channel (ACBK1) GI:8515883 from
[Arabidopsis thaliana]; contains Pfam domain, PF00520:
Ion transport protein
Length = 706
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +1
Query: 226 YHQKMKVNLRNHYKNKKY---KPLXFKSQEDPCYAQGSY*TR 342
Y +K + +L +KN K+ KPL F S +DP + + S TR
Sbjct: 19 YGRKARPSLDRVFKNVKWGFKKPLSFPSHKDPDHKETSSVTR 60
>At1g63980.1 68414.m07247 D111/G-patch domain-containing protein
contains Pfam profile PF01585: G-patch domain
Length = 391
Score = 27.1 bits (57), Expect = 5.5
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Frame = +1
Query: 163 VASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLXFKSQEDP----CYAQGS 330
V S+ +K++ V K + R Y ++ K L N Y +K + + K EDP C S
Sbjct: 105 VKSEPAKLKTVAK-VTRPQGRYKRREKGKLVNSYSSKDLEGILVKRTEDPSPAVCDIADS 163
Query: 331 Y*TR--SKDQDEERDQKEISLPT 393
S+DQD +++I P+
Sbjct: 164 MDIEIISEDQDASIKEQKIEEPS 186
>At5g15020.1 68418.m01761 paired amphipathic helix repeat-containing
protein similar to transcription co-repressor Sin3
[Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 1377
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 244 VNLRNHYKNKKYKPLXFKSQEDPCYAQGSY*TRSKDQDEERDQKE 378
V +NHYK+ ++ FK Q+ + + + KD +E+ QKE
Sbjct: 662 VYAKNHYKSLDHRSFYFKQQDSKNLSAKALVSEVKDL-KEKSQKE 705
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,226,762
Number of Sequences: 28952
Number of extensions: 107667
Number of successful extensions: 308
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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