Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_L20
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...   138   8e-34
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    27   2.3  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    27   2.3  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    27   3.0  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    27   3.0  
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    26   5.2  
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    25   9.1  

>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score =  138 bits (333), Expect = 8e-34
 Identities = 72/145 (49%), Positives = 102/145 (70%), Gaps = 6/145 (4%)
 Frame = +3

Query: 45  LIKAXGAEADSFEXSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVPM 218
           ++K   ++    +  ++Q L +LE++S D+  +LR L IT A+E+E+   KK+I+++VP 
Sbjct: 7   IVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVPQ 66

Query: 219 PKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVY 398
           P LKAF K Q RL RELEKKF+ +HV+F+  R+ILPKP  K+RV   QKRPRSRTLT+V+
Sbjct: 67  PLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAVH 124

Query: 399 DAILEDLVFP----G*DRRQAHQGQ 461
           +AILED+VFP    G   RQA  G+
Sbjct: 125 NAILEDIVFPTEIIGKRTRQATDGR 149



 Score = 65.7 bits (153), Expect = 5e-12
 Identities = 29/53 (54%), Positives = 37/53 (69%)
 Frame = +1

Query: 433 EIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 591
           EI+GKR R   DG + IKV LD     T+++K+ +F SVY KLTG+ VTFEFP
Sbjct: 136 EIIGKRTRQATDGRKTIKVFLDNRDANTVDYKLGSFSSVYHKLTGKNVTFEFP 188


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = -3

Query: 334 LGLGRILRSPTKTTCLPLNFFSSSRTS 254
           LG   I +SPTK    PLNFF SSR S
Sbjct: 33  LGTNVIAQSPTK----PLNFFHSSRWS 55


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +1

Query: 427 LAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTF-QSVYKKLTGREVTFEFP 591
           L++ +GK+  ++   ++L  VHL  +   TIE  +  F Q+V  + T    +F+ P
Sbjct: 578 LSKRLGKKATLRKSPAKLYYVHLKLSGNETIERFIKKFTQAVLFQSTKSTASFQLP 633


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1184

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +1

Query: 307  ETVRSCLSPATKPVLLTNKRGHAQ 378
            E+ +  ++ +TKPV +T+K GH++
Sbjct: 1069 ESTKPAVNNSTKPVAVTSKNGHSR 1092


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +3

Query: 204 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 296
           +++P  K   F+KI+  +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 324 PKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPG 431
           P  S + R  N+++  RSR   S + + LED+++ G
Sbjct: 49  PVLSPRRRRMNRRRNERSRNFPSNHLSYLEDMIYLG 84


>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 512 VCWFLSKCTLMSCEPSNLTLMR 447
           +C FL K T  SC   NL L++
Sbjct: 207 LCSFLPKSTYRSCRSDNLDLLK 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,433,268
Number of Sequences: 5004
Number of extensions: 47870
Number of successful extensions: 137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)