Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_L20
(636 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 122 3e-28
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 109 1e-24
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 73 2e-13
02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168 29 2.3
04_01_0483 + 6343599-6343778,6343886-6344011,6344096-6344173,634... 29 4.1
04_01_0480 + 6279576-6279755,6279863-6279988,6280074-6280151,628... 29 4.1
04_01_0485 + 6389646-6389665,6390063-6390123,6390231-6390356,639... 28 7.1
>03_02_0683 +
10363963-10364037,10364112-10364185,10364312-10364435,
10365047-10365229,10365478-10365600
Length = 192
Score = 122 bits (293), Expect = 3e-28
Identities = 63/128 (49%), Positives = 91/128 (71%), Gaps = 2/128 (1%)
Frame = +3
Query: 51 KAXGAEADSFEXSISQALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPK 224
K G E FE S++QA +LE N +LK++L++LYI A ++++ N+K+++I+VP
Sbjct: 10 KEKGLEPSEFEDSVAQAFFDLENGNQELKSELKDLYINNAVQMDIAGNRKAVVIHVPYRL 69
Query: 225 LKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDA 404
KAF+KI +RLVRELEKKFSGK VV V R+I+ P + V +RPR+RTLT+V+D
Sbjct: 70 RKAFKKIHVRLVRELEKKFSGKDVVIVATRRIVRPPKKGSAV----QRPRTRTLTAVHDG 125
Query: 405 ILEDLVFP 428
ILED+V+P
Sbjct: 126 ILEDVVYP 133
Score = 70.1 bits (164), Expect = 1e-12
Identities = 28/54 (51%), Positives = 44/54 (81%)
Frame = +1
Query: 430 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 591
AEIVGKRIR +LDG+++IK+ LD ++ E+K++TF +VY++L G++V FE+P
Sbjct: 134 AEIVGKRIRYRLDGAKVIKIFLDPKERNNTEYKLETFSAVYRRLCGKDVAFEYP 187
>05_03_0610 -
16167557-16167679,16168236-16168418,16169291-16169414,
16169514-16169626,16169668-16169742
Length = 205
Score = 109 bits (263), Expect = 1e-24
Identities = 59/113 (52%), Positives = 81/113 (71%), Gaps = 2/113 (1%)
Frame = +3
Query: 96 QALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVREL 269
QA +LE N +LK+ L++LYI A +++L N+K++IIYVP KA++KI +RLVREL
Sbjct: 38 QAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVREL 97
Query: 270 EKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFP 428
EKKFSGK VV V R+I+ P + V RPR+RTLT+V+D ILED+V+P
Sbjct: 98 EKKFSGKDVVLVATRRIVRPPKKGSAVV----RPRTRTLTAVHDGILEDVVYP 146
Score = 68.5 bits (160), Expect = 4e-12
Identities = 27/54 (50%), Positives = 42/54 (77%)
Frame = +1
Query: 430 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 591
AEIVGKR+R LDG +++K+ LD ++ E+K+DTF SVY++L G++V F++P
Sbjct: 147 AEIVGKRVRYHLDGRKIMKIFLDPKERNNTEYKLDTFSSVYRRLCGKDVVFDYP 200
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 72.9 bits (171), Expect = 2e-13
Identities = 41/91 (45%), Positives = 60/91 (65%)
Frame = +3
Query: 150 LYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPK 329
+Y+ ++ N K ++I+V KAF+KI +RLV+ELEKKFSGK VVF R+I+ +
Sbjct: 31 MYVCSQMDVAA-NWKVVVIHVLYHLCKAFKKIHVRLVKELEKKFSGKDVVFDATRRIV-R 88
Query: 330 PSHKTRVANKQKRPRSRTLTSVYDAILEDLV 422
P +K + PR+RTL +V+D ILED+V
Sbjct: 89 PLNKGSAVH---HPRTRTLITVHDGILEDVV 116
>02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168
Length = 336
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -3
Query: 364 FCLLATRVLWLGLGRILRSPTKTTCLPLNFFSSSRTSLI 248
F L A+ L L L +L T CLPL FF+ + SL+
Sbjct: 4 FSLFASLSLSLSLSFVLADITDNPCLPLIFFAGNLISLM 42
>04_01_0483 +
6343599-6343778,6343886-6344011,6344096-6344173,
6344859-6344984,6345253-6345354,6345425-6345571,
6345861-6345984,6346992-6347152
Length = 347
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/45 (22%), Positives = 23/45 (51%)
Frame = +3
Query: 102 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 236
LVE+ D ++ + Y+ + L++K +++Y+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPHRVRLYSKDDVLLYIKEMKISGF 157
>04_01_0480 +
6279576-6279755,6279863-6279988,6280074-6280151,
6280847-6280972,6281244-6281345,6281416-6281490,
6281852-6281975,6283005-6283107,6283546-6283617,
6283662-6283788,6284125-6284180,6284438-6284453
Length = 394
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +3
Query: 102 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 236
LVE+ D ++ + Y+ + L +K ++IY+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLIYIKEMKISGF 157
>04_01_0485 +
6389646-6389665,6390063-6390123,6390231-6390356,
6390441-6390518,6391304-6391429,6391630-6391731,
6391802-6391948,6392237-6392360,6393608-6393737,
6393908-6394130
Length = 378
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/45 (22%), Positives = 22/45 (48%)
Frame = +3
Query: 102 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 236
LVE+ D ++ + Y+ + L +K +++Y+ K+ F
Sbjct: 80 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLLYIKEMKISGF 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,951,424
Number of Sequences: 37544
Number of extensions: 318363
Number of successful extensions: 786
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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