Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_L20
(636 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0) 152 3e-37
SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011) 31 0.78
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 29 4.2
SB_39979| Best HMM Match : RVT_1 (HMM E-Value=4.6e-12) 28 5.5
SB_8510| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0) 28 5.5
SB_48206| Best HMM Match : LTXXQ (HMM E-Value=3) 28 7.3
SB_43496| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15) 27 9.7
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0) 27 9.7
SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3) 27 9.7
>SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)
Length = 157
Score = 152 bits (368), Expect = 3e-37
Identities = 73/111 (65%), Positives = 92/111 (82%)
Frame = +3
Query: 45 LIKAXGAEADSFEXSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPK 224
++K G A+ FE ISQA++ELE NSD+KAQLRELYI+ AKEI++ KK+III+VP+P+
Sbjct: 11 IVKPQGETANEFEQGISQAILELEMNSDMKAQLRELYISSAKEIDVGGKKAIIIFVPVPQ 70
Query: 225 LKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRS 377
++AFQKIQ RLVRELEKKFSGKHVV V R+ILP+P+ K+R KQKRPRS
Sbjct: 71 IRAFQKIQTRLVRELEKKFSGKHVVIVAQRRILPRPTRKSR-NQKQKRPRS 120
Score = 62.5 bits (145), Expect = 3e-10
Identities = 25/34 (73%), Positives = 31/34 (91%)
Frame = +1
Query: 490 HLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 591
HLDK QQTTI+HK++TF +VYKKLTG++V FEFP
Sbjct: 121 HLDKTQQTTIDHKLETFSTVYKKLTGKDVVFEFP 154
>SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)
Length = 812
Score = 31.1 bits (67), Expect = 0.78
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Frame = +3
Query: 120 NSDLKAQLRELYITKAKEIE---LHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFS-- 284
+ + K L+E+ I ++K+ E + + KS PKLKA Q + + KK
Sbjct: 261 HEEKKEDLKEVVIKQSKQDEATAIKDSKSESKPASKPKLKAVQNDAPKKANKPAKKAKKP 320
Query: 285 ---GKHVVFVGDRKILPKPSHKTRVANKQKRPRS 377
K V+ LP+ +H+ AN Q+RP++
Sbjct: 321 VKRAKKVLNKKKMDTLPRGAHRPASANAQRRPQN 354
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 28.7 bits (61), Expect = 4.2
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Frame = +3
Query: 114 ETNSDLKAQLRE----LYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKF 281
E N+ LK +L E L +T+ +E E+ N K + +YV M KL++ Q ELEK+
Sbjct: 1699 EDNAILKRKLDEKETALKVTQDREREM-NDKLMALYVNMSKLESTQGTLEEKNAELEKE- 1756
Query: 282 SGKHVVFVGDRKILP-KPSHKTRVANKQ 362
++ ++I P K S T VA +
Sbjct: 1757 -----LYSAQQEIQPLKDSFNTAVAENE 1779
>SB_39979| Best HMM Match : RVT_1 (HMM E-Value=4.6e-12)
Length = 792
Score = 28.3 bits (60), Expect = 5.5
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Frame = +1
Query: 337 TKPVLLTNK--RGHAQGH*PLCTMLSSRTWSSLAEIVG--KRIRVKLDGSQLIKVHLDKN 504
TK +L+T K + + PLC L + S+ E + K + + LDG +VH+D+
Sbjct: 713 TKAILVTGKWIGRNVEKDPPLC--LDLKIGDSMIEEISSYKLLGITLDGQMTFEVHIDEL 770
Query: 505 QQTTIEHK-VDTFQSVYK 555
+T ++ T++S+ K
Sbjct: 771 SKTFKTYRTTKTYKSLLK 788
>SB_8510| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = -2
Query: 575 TSRPVSFLYTDWKVSTLCSIVVCWFLSKCTLMSCEPSNL 459
T+R ++ ++DW ++ C CW +S T+ S +N+
Sbjct: 120 TNRCGAYYHSDWLIAIPCRRRACWTVSLITIFSQVLTNI 158
>SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 1831
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 124 PTSKPNFGSFTLQKLKKLNYTIRS 195
P S N+G FT+++LK +YT +S
Sbjct: 1415 PLSNDNYGDFTMRRLKVSSYTEQS 1438
>SB_48206| Best HMM Match : LTXXQ (HMM E-Value=3)
Length = 513
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = -2
Query: 329 LRQDLTVSNKDYMFTTELLFELTDKPDLDLLKGLQFRHRHIDDDRLL 189
LRQ L SN +L L K D+ K +H+ DD LL
Sbjct: 170 LRQRLNSSNPSISSPINILDALCQKHDIAYSKSKDLDDKHVADDNLL 216
>SB_43496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 380
Score = 27.9 bits (59), Expect = 7.3
Identities = 28/137 (20%), Positives = 61/137 (44%), Gaps = 5/137 (3%)
Frame = +3
Query: 63 AEADSFEXSISQALVELETNSDLKAQLRELYITKAKEI-----ELHNKKSIIIYVPMPKL 227
A+ + + Q E++T+ + K +RE ITK K + E +++++ + K+
Sbjct: 237 AQRKTLSDAAKQCSTEIKTSENKKMTIREDMITKRKHVRDRRREHREEETVLRKDELDKV 296
Query: 228 KAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAI 407
+ + + +RE+E++F + IL + A +K+ + + Y A+
Sbjct: 297 AKLYEEEKQDLREMEQEFQNMEAKY---NAIL---EERRLAAEAEKKRQQELVQRNYAAV 350
Query: 408 LEDLVFPG*DRRQAHQG 458
V+ G R+A +G
Sbjct: 351 RIQAVWRGFRVRKALKG 367
>SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)
Length = 417
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
Frame = +1
Query: 103 WSNSKPTPTSKPN--------FG-SFTLQKLKKLNYTIRSRS 201
WS+ KPTP KPN FG T Q L+K N+ + RS
Sbjct: 125 WSDPKPTPGCKPNTFRGGGCYFGPDVTSQVLRKHNFELLVRS 166
>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
Length = 2858
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 95 RDRGLEGIRLSTARFDELRTQLDNFT 18
RDR LE +R STA+ L Q+ + T
Sbjct: 1410 RDRALEDLRTSTAKISTLEQQIRDLT 1435
>SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3)
Length = 151
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/26 (42%), Positives = 21/26 (80%)
Frame = +3
Query: 210 VPMPKLKAFQKIQIRLVRELEKKFSG 287
VP+P++ A QK++ +L R++E+K +G
Sbjct: 69 VPLPQVSAMQKVKGKL-RDMEQKLNG 93
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,181,617
Number of Sequences: 59808
Number of extensions: 361628
Number of successful extensions: 966
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -