Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_L20
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical pr...   152   2e-37
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U70849-11|AAK29800.1|  897|Caenorhabditis elegans Hypothetical p...    28   6.4  
U70849-10|AAK29799.1|  910|Caenorhabditis elegans Hypothetical p...    28   6.4  
Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical pr...    27   8.5  
AF036706-9|AAK39281.1|  681|Caenorhabditis elegans Hypothetical ...    27   8.5  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    27   8.5  

>Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical
           protein ZC434.2 protein.
          Length = 194

 Score =  152 bits (368), Expect = 2e-37
 Identities = 72/129 (55%), Positives = 97/129 (75%), Gaps = 1/129 (0%)
 Frame = +3

Query: 45  LIKAXGAEADSFEXSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPK 224
           L+K+ G      E  +SQAL++LETN D+++QL+ELYI   KE+EL NK +IIIYVP+P+
Sbjct: 8   LLKSDGKVVSEIEKQVSQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAIIIYVPVPQ 67

Query: 225 LKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRV-ANKQKRPRSRTLTSVYD 401
           LKAF KI   LVRELEKKF G+ ++ +  R+ILPKP   ++    KQKRPRSRTLT+V+D
Sbjct: 68  LKAFHKIHPALVRELEKKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVHD 127

Query: 402 AILEDLVFP 428
           A L++LV+P
Sbjct: 128 AWLDELVYP 136



 Score = 89.0 bits (211), Expect = 2e-18
 Identities = 37/56 (66%), Positives = 48/56 (85%)
 Frame = +1

Query: 430 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFPEP 597
           AE+VG+RIRVKLDG ++ KVHLDK+ QT + HK+  F SVY+KLTG++VTFEFP+P
Sbjct: 137 AEVVGRRIRVKLDGKKVYKVHLDKSHQTNVGHKIGVFASVYRKLTGKDVTFEFPDP 192


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +1

Query: 106 SNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSMCR 216
           S+SK T      F SF  Q ++K  YT  S SSS  R
Sbjct: 376 SSSKKTTKEDDFFDSFETQPVQKSRYTASSSSSSTSR 412


>U70849-11|AAK29800.1|  897|Caenorhabditis elegans Hypothetical
           protein F29B9.2b protein.
          Length = 897

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 457 VKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEF 588
           VK+ GS      +D   Q+T   K+DTF+ +++    R + + F
Sbjct: 379 VKIMGSDYEVDTIDVYNQSTYSMKLDTFRKLFRDTKNRPLLYNF 422


>U70849-10|AAK29799.1|  910|Caenorhabditis elegans Hypothetical
           protein F29B9.2a protein.
          Length = 910

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 457 VKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEF 588
           VK+ GS      +D   Q+T   K+DTF+ +++    R + + F
Sbjct: 392 VKIMGSDYEVDTIDVYNQSTYSMKLDTFRKLFRDTKNRPLLYNF 435


>Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical
           protein F45H11.3 protein.
          Length = 738

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -2

Query: 128 VGVGFEFDQRLRDRGLEGIRLSTARFDEL 42
           V VGFE   RLRD+GL   +LS   +D L
Sbjct: 522 VEVGFENWIRLRDKGLSHSQLSCQLYDTL 550


>AF036706-9|AAK39281.1|  681|Caenorhabditis elegans Hypothetical
           protein T07A9.9a protein.
          Length = 681

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +3

Query: 339 KTRVANKQKRPRSRTLTSVYDAILEDLVFPG*DRRQAH 452
           K ++  K K  RSR+L++V  A  ++L FP  + ++AH
Sbjct: 599 KPQLGKKMKVGRSRSLSAVRPAPRDELAFPD-EEKRAH 635


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
           family protein 5 protein.
          Length = 938

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 500 LSKCTLMSCEPSNLTLMRLPTISAREDQVLEDSI 399
           L KC L + EP  L L  +  +  R+DQ+  D I
Sbjct: 167 LKKCLLSTQEPLTLLLRNMMEVGQRKDQLGADEI 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,513,558
Number of Sequences: 27780
Number of extensions: 271329
Number of successful extensions: 725
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)