Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_L20
(636 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 124 4e-29
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 124 4e-29
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 120 8e-28
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 113 7e-26
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 113 7e-26
At5g10570.1 68418.m01223 basic helix-loop-helix (bHLH) family pr... 30 1.1
At5g49860.1 68418.m06174 jacalin lectin family protein similar t... 29 2.0
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 29 3.4
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 29 3.4
At2g07110.1 68415.m00813 hypothetical protein 28 4.5
At1g52960.1 68414.m05990 hypothetical protein very low similarit... 28 6.0
At1g64590.1 68414.m07321 short-chain dehydrogenase/reductase (SD... 27 7.9
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 124 bits (300), Expect = 4e-29
Identities = 63/128 (49%), Positives = 93/128 (72%), Gaps = 2/128 (1%)
Frame = +3
Query: 51 KAXGAEADSFEXSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPK 224
K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 10 KDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVPFRL 69
Query: 225 LKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDA 404
KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTLTSV++A
Sbjct: 70 RKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEA 125
Query: 405 ILEDLVFP 428
+LED+ +P
Sbjct: 126 MLEDVAYP 133
Score = 66.1 bits (154), Expect = 2e-11
Identities = 28/54 (51%), Positives = 41/54 (75%)
Frame = +1
Query: 430 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 591
AEIVGKR R +LDG++++KV LD + E+K++T VY+KLTG++V FE+P
Sbjct: 134 AEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDVVFEYP 187
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 124 bits (300), Expect = 4e-29
Identities = 63/128 (49%), Positives = 93/128 (72%), Gaps = 2/128 (1%)
Frame = +3
Query: 51 KAXGAEADSFEXSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPK 224
K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 10 KDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVPFRL 69
Query: 225 LKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDA 404
KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTLTSV++A
Sbjct: 70 RKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEA 125
Query: 405 ILEDLVFP 428
+LED+ +P
Sbjct: 126 MLEDVAYP 133
Score = 66.1 bits (154), Expect = 2e-11
Identities = 28/54 (51%), Positives = 41/54 (75%)
Frame = +1
Query: 430 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 591
AEIVGKR R +LDG++++KV LD + E+K++T VY+KLTG++V FE+P
Sbjct: 134 AEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDVVFEYP 187
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 120 bits (289), Expect = 8e-28
Identities = 64/128 (50%), Positives = 90/128 (70%), Gaps = 2/128 (1%)
Frame = +3
Query: 51 KAXGAEADSFEXSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPK 224
K AE E ++QAL +LE TN +LK++L++LYI +A +++ N+K+++IYVP
Sbjct: 10 KDKNAEPTECEEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKAVVIYVPFRL 69
Query: 225 LKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDA 404
KAF+KI RLVRELEKKFSGK V+FV R+I+ P V +RPR+RTLTSV++A
Sbjct: 70 RKAFRKIHPRLVRELEKKFSGKDVIFVTTRRIMRPPKKGAAV----QRPRNRTLTSVHEA 125
Query: 405 ILEDLVFP 428
+LED+ FP
Sbjct: 126 MLEDVAFP 133
Score = 68.9 bits (161), Expect = 3e-12
Identities = 29/54 (53%), Positives = 42/54 (77%)
Frame = +1
Query: 430 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 591
AEIVGKR R +LDGS+++KV LD ++ E+K++T VY+KLTG++V FE+P
Sbjct: 134 AEIVGKRTRYRLDGSKIMKVFLDAKEKNNTEYKLETMVGVYRKLTGKDVVFEYP 187
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 113 bits (273), Expect = 7e-26
Identities = 58/128 (45%), Positives = 89/128 (69%), Gaps = 2/128 (1%)
Frame = +3
Query: 51 KAXGAEADSFEXSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVPMPK 224
K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 10 KEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVPYRL 69
Query: 225 LKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDA 404
KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+RTLTSV++A
Sbjct: 70 RKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEA 125
Query: 405 ILEDLVFP 428
IL+D+V P
Sbjct: 126 ILDDVVLP 133
Score = 72.9 bits (171), Expect = 2e-13
Identities = 31/54 (57%), Positives = 43/54 (79%)
Frame = +1
Query: 430 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 591
AEIVGKR R +LDG++++KV LD ++ E+KV+ F +VYKKLTG++V FEFP
Sbjct: 134 AEIVGKRTRYRLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTGKDVVFEFP 187
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 113 bits (273), Expect = 7e-26
Identities = 58/128 (45%), Positives = 89/128 (69%), Gaps = 2/128 (1%)
Frame = +3
Query: 51 KAXGAEADSFEXSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVPMPK 224
K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 10 KEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVPYRL 69
Query: 225 LKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDA 404
KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+RTLTSV++A
Sbjct: 70 RKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEA 125
Query: 405 ILEDLVFP 428
IL+D+V P
Sbjct: 126 ILDDVVLP 133
Score = 72.9 bits (171), Expect = 2e-13
Identities = 31/54 (57%), Positives = 43/54 (79%)
Frame = +1
Query: 430 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 591
AEIVGKR R +LDG++++KV LD ++ E+KV+ F +VYKKLTG++V FEFP
Sbjct: 134 AEIVGKRTRYRLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTGKDVVFEFP 187
>At5g10570.1 68418.m01223 basic helix-loop-helix (bHLH) family
protein bHLH transcription factor, Arabidopsis thaliana,
EMBL:AC005167
Length = 315
Score = 30.3 bits (65), Expect = 1.1
Identities = 21/93 (22%), Positives = 45/93 (48%)
Frame = +1
Query: 301 LLETVRSCLSPATKPVLLTNKRGHAQGH*PLCTMLSSRTWSSLAEIVGKRIRVKLDGSQL 480
L + + S SP P++L + + + PL M S+++ S+ E KR KL+G
Sbjct: 95 LEDIIHSSYSPP--PLILPASQENTNNYSPL--MEESKSFISIGETNKKRSNKKLEGQPS 150
Query: 481 IKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVT 579
+ ++ ++ + ++ +S+ K+T + T
Sbjct: 151 KNLMAERRRRKRLNDRLSLLRSIVPKITKMDRT 183
>At5g49860.1 68418.m06174 jacalin lectin family protein similar to
myrosinase-binding protein homolog [Arabidopsis
thaliana] GI:2997767; contains Pfam profile PF01419
jacalin-like lectin domain
Length = 221
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -1
Query: 450 ALAYDLSQGRPSPRG*HRTQRSMSLSVASFVC*QHGFCGWA*AGSYGLQQRLHVYH 283
+L + S+GR SP+ + T S+ + S C GF GW GS G L Y+
Sbjct: 8 SLTFKTSKGRTSPKFGYGTSDSVEFVLESKGCAIVGFYGWYKTGS-GYTTALGAYY 62
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 362 KEATLKDIDLCVRCYPRGLG 421
+E++LK CVRCYP G G
Sbjct: 181 RESSLKYQTRCVRCYPNGTG 200
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 362 KEATLKDIDLCVRCYPRGLG 421
+E++LK CVRCYP G G
Sbjct: 180 RESSLKYQTRCVRCYPNGTG 199
>At2g07110.1 68415.m00813 hypothetical protein
Length = 150
Score = 28.3 bits (60), Expect = 4.5
Identities = 22/67 (32%), Positives = 33/67 (49%)
Frame = -3
Query: 448 ACLRSQPGKTKSSRIASYTEVNVLERGLFCLLATRVLWLGLGRILRSPTKTTCLPLNFFS 269
ACL+S G K R+ + ERGLFC L R + IL+ ++ C+ L
Sbjct: 47 ACLKSY-GSLKPDRLVIVNAFSFSERGLFCRL--RKVEKEYETILKRTLQSICV-LRVVP 102
Query: 268 SSRTSLI 248
++ TS+I
Sbjct: 103 NTTTSVI 109
>At1g52960.1 68414.m05990 hypothetical protein very low similarity
to SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 996
Score = 27.9 bits (59), Expect = 6.0
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Frame = +3
Query: 177 ELHNKKSIIIY--VPMPKLKAFQKIQIRLVREL-----EKKFSGKHVVFVGD-RKILP 326
EL + ++II+ PM F+ + R +R++ +K F GK +VF GD R++LP
Sbjct: 640 ELVKEANLIIWDETPMMSKHCFESLD-RTLRDIMNNPGDKPFGGKGIVFGGDFRQVLP 696
>At1g64590.1 68414.m07321 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198
short-chain dehydrogenase/reductase (SDR) superfamily
Length = 334
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 430 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSV 549
AE RI + +++I +HLD + T++ VD F+S+
Sbjct: 71 AEETKARILSEFPDAEIIVMHLDLSSLTSVRRFVDDFESL 110
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,902,582
Number of Sequences: 28952
Number of extensions: 259089
Number of successful extensions: 750
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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