Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_L19
(508 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.) 175 2e-44
SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06) 34 0.059
SB_46844| Best HMM Match : VWA (HMM E-Value=1.3e-31) 29 1.7
SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23) 28 3.8
SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38) 28 5.1
SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7
SB_43823| Best HMM Match : MAM (HMM E-Value=0) 27 6.7
SB_31205| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
>SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 171
Score = 175 bits (426), Expect = 2e-44
Identities = 85/128 (66%), Positives = 101/128 (78%), Gaps = 16/128 (12%)
Frame = +2
Query: 26 MADQTEKAFQKQATVFLNRKGGM----KRKDMRHHKNVGLGFKTP------------REA 157
MA+QTE+A+QKQA +F NRK + K+KD+R +NVGLGFKTP REA
Sbjct: 1 MAEQTERAYQKQAPIFQNRKRVLGQVTKKKDLRFVRNVGLGFKTPKDVCNCTYLLPEREA 60
Query: 158 IEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMS 337
IEGTYIDKKCPFTGNVSIRGRILTG+ + MKM+RTI+IRRDYLHY+ KYNRFEKRH+N++
Sbjct: 61 IEGTYIDKKCPFTGNVSIRGRILTGICRSMKMKRTIIIRRDYLHYIKKYNRFEKRHKNLA 120
Query: 338 VHLSPCFR 361
H SPCFR
Sbjct: 121 AHCSPCFR 128
Score = 50.0 bits (114), Expect = 1e-06
Identities = 19/26 (73%), Positives = 25/26 (96%)
Frame = +3
Query: 366 VEIGDIVTIGECRPLSKTVRFNVLKV 443
+ +GD++T+G+CRPLSKTVRFNVLKV
Sbjct: 130 IALGDLITVGQCRPLSKTVRFNVLKV 155
>SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)
Length = 73
Score = 34.3 bits (75), Expect = 0.059
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +3
Query: 375 GDIVTIGECRPLSKTVRFNVLKV 443
GD+V I ECRPLSK +FNV ++
Sbjct: 29 GDVVRIKECRPLSKMKKFNVEEI 51
>SB_46844| Best HMM Match : VWA (HMM E-Value=1.3e-31)
Length = 332
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = +2
Query: 200 NVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRXRGDW* 379
N++IR + + + +Q + R DY+ + ++ K HR++S + DW
Sbjct: 148 NIAIRAVGIGKEIDERALQTLVSNRNDYIFRVGSFDALSKLHRSLSQSICGTV-GAPDWL 206
Query: 380 YC 385
YC
Sbjct: 207 YC 208
>SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 176 QCRYPQSPLWEF*SLNQHSYGDACP 102
+C QS LWE SL QH Y + P
Sbjct: 505 KCNALQSSLWELKSLQQHYYPEVSP 529
>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
Length = 378
Score = 28.3 bits (60), Expect = 3.8
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +2
Query: 44 KAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKK-CPFTGNVSIRGR 220
+A + T ++RK K+K+ + KN+ K PR T++ + G V++R R
Sbjct: 216 QALAMKVTSRVSRKIDSKKKNKQRRKNLRALRKAPRRPAPVTHLSARGADVDGAVALRAR 275
Query: 221 ILTGVVQK 244
G Q+
Sbjct: 276 ARAGNAQR 283
>SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)
Length = 525
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 221 ILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCF 358
I+ VV K K + VI RD+ Y ++ +R VH SP F
Sbjct: 64 IMNKVVPKEKEDKNKVITRDHQAYFAFSCKYHRRMVLTVVHFSPSF 109
>SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Frame = -3
Query: 131 NQHSYGDACPSSSCHLS---CSGKRWPVSETLSLSDPPFC 21
N HS D CP+S C+L C + ++ TL P C
Sbjct: 33 NDHSDEDDCPNSDCNLEQIYCPVSQKCLNRTLQCDGKPDC 72
>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
Length = 1724
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Frame = -3
Query: 131 NQHSYGDACPSSSCHLS---CSGKRWPVSETLSLSDPPFC 21
N HS D CP+S C+L C + ++ TL P C
Sbjct: 1330 NDHSDEDDCPNSDCNLEQIYCPVSQKCLNRTLQCDGKPDC 1369
>SB_31205| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1528
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 475 LKDFFEPLPFETFKTLNLTVLDKGLHS 395
+K+F + L FET K+L L L +G+ S
Sbjct: 1349 VKEFIDTLDFETIKSLCLKSLQRGVGS 1375
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,321,167
Number of Sequences: 59808
Number of extensions: 311502
Number of successful extensions: 754
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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