Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP01_F_L19
(508 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B) ribo... 163 6e-41
At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A) 161 3e-40
At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C) 157 5e-39
At4g35720.1 68417.m05069 expressed protein contains Pfam profile... 31 0.59
At1g49400.1 68414.m05537 ribosomal protein S17 family protein si... 30 0.78
At3g18880.1 68416.m02398 ribosomal protein S17 family protein si... 29 1.8
At4g26980.1 68417.m03882 expressed protein 27 5.5
At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibit... 27 5.5
At3g11000.1 68416.m01328 expressed protein 27 7.3
At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast ... 27 7.3
At5g50640.1 68418.m06274 CBS domain-containing protein / octicos... 27 9.6
At5g50530.1 68418.m06258 CBS domain-containing protein / octicos... 27 9.6
At5g40100.1 68418.m04864 disease resistance protein (TIR-NBS-LRR... 27 9.6
At1g61380.1 68414.m06917 S-locus protein kinase, putative simila... 27 9.6
>At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B)
ribosomal protein S11, Arabidopsis thaliana,PIR2:C35542
Length = 159
Score = 163 bits (396), Expect = 6e-41
Identities = 79/122 (64%), Positives = 92/122 (75%), Gaps = 6/122 (4%)
Frame = +2
Query: 26 MADQTEKAFQKQATVFLNRKGGMKRK-----DMRHHKNVGLGFKTPREAIEGTYIDKKCP 190
MA+QTEKAF KQ VFL+ K K K R KN+GLGFKTPREAIEGTYID+KCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCP 60
Query: 191 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRXR- 367
FTG VSIRGRIL+G KMQRTI++RRDYLH++ KY R+EKRH N+ H+SPCFR +
Sbjct: 61 FTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFRVKE 120
Query: 368 GD 373
GD
Sbjct: 121 GD 122
Score = 48.0 bits (109), Expect = 4e-06
Identities = 22/26 (84%), Positives = 24/26 (92%)
Frame = +3
Query: 366 VEIGDIVTIGECRPLSKTVRFNVLKV 443
V+ GD VTIG+CRPLSKTVRFNVLKV
Sbjct: 118 VKEGDRVTIGQCRPLSKTVRFNVLKV 143
>At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)
Length = 160
Score = 161 bits (390), Expect = 3e-40
Identities = 77/122 (63%), Positives = 90/122 (73%), Gaps = 6/122 (4%)
Frame = +2
Query: 26 MADQTEKAFQKQATVFLNRKGGMKRK-----DMRHHKNVGLGFKTPREAIEGTYIDKKCP 190
MA+QTEKAF KQ VFL+ K K K R KN+GLGFKTPREAI+G Y+DKKCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCP 60
Query: 191 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRXR- 367
FTG VSIRGRIL G KMQRTI++RRDYLH++ KY R+EKRH N+ H+SPCFR +
Sbjct: 61 FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120
Query: 368 GD 373
GD
Sbjct: 121 GD 122
Score = 45.2 bits (102), Expect = 3e-05
Identities = 20/26 (76%), Positives = 23/26 (88%)
Frame = +3
Query: 366 VEIGDIVTIGECRPLSKTVRFNVLKV 443
V+ GD + IG+CRPLSKTVRFNVLKV
Sbjct: 118 VKEGDHIIIGQCRPLSKTVRFNVLKV 143
>At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)
Length = 159
Score = 157 bits (380), Expect = 5e-39
Identities = 77/122 (63%), Positives = 90/122 (73%), Gaps = 6/122 (4%)
Frame = +2
Query: 26 MADQTEKAFQKQATVFLNRK--GGMKRKDM---RHHKNVGLGFKTPREAIEGTYIDKKCP 190
MA+QTEKAF KQ VFL+ K G KR R KN+GLGFKTPREAI+G YID KCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCP 60
Query: 191 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRXR- 367
FTG VSIRGRIL G KMQRTI++RR+YLH++ KY R+EKRH N+ H+SPCFR +
Sbjct: 61 FTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120
Query: 368 GD 373
GD
Sbjct: 121 GD 122
Score = 45.6 bits (103), Expect = 2e-05
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = +3
Query: 366 VEIGDIVTIGECRPLSKTVRFNVLKV 443
V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 118 VKEGDHVIIGQCRPLSKTVRFNVLKV 143
>At4g35720.1 68417.m05069 expressed protein contains Pfam profile
PF03087: Arabidopsis protein of unknown function
Length = 325
Score = 30.7 bits (66), Expect = 0.59
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +2
Query: 71 FLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTG 199
FL+ G+K K+ HHK G+ K ++ IE + +K+ TG
Sbjct: 203 FLSSPKGLKTKNHHHHKGWGIVMKLVKKGIEHHHQEKRDYETG 245
>At1g49400.1 68414.m05537 ribosomal protein S17 family protein
similar to 40S ribosomal protein S17 GI:1620985 from
[Nicotiana plumbaginifolia]
Length = 116
Score = 30.3 bits (65), Expect = 0.78
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 230 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVH 343
G V KMQ+++V+ D L + YNR+ KR H
Sbjct: 6 GTVVSNKMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAH 43
>At3g18880.1 68416.m02398 ribosomal protein S17 family protein
similar to 40S ribosomal protein S17 GB:Y08858 from
[Nicotiana plumbaginifolia]
Length = 105
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 218 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVH 343
+ + G V KMQ ++V+ D L + YNR+ KR H
Sbjct: 2 KAVIGTVVSNKMQMSVVVAVDRLFHNNIYNRYVKRTSKFMAH 43
>At4g26980.1 68417.m03882 expressed protein
Length = 343
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 140 KTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQK 244
+ PREA+ +D+ PF ++ + ++TGVVQK
Sbjct: 242 EVPREALPDVALDE--PFVKDIDPKTWVVTGVVQK 274
>At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibitor
family protein low similarity to pectinesterase from
Arabidopsis thaliana SP|Q42534, Lycopersicon esculentum
SP|Q43143; contains Pfam profile PF04043: Plant
invertase/pectin methylesterase inhibitor
Length = 206
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 215 GRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRN 331
G+++ GVV+ +R + + R + L NRF RH++
Sbjct: 168 GKVMDGVVKSAIRRRVVHVARVTSNALALVNRFAARHKS 206
>At3g11000.1 68416.m01328 expressed protein
Length = 488
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 366 RXLKQGDKCTDIFLCRFSNL 307
R LK+GD C IF C+FS +
Sbjct: 4 RNLKKGDLCGVIFGCKFSTI 23
>At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast /
CS17 (RPS17) identical to 30S ribosomal protein S17,
chloroplast precursor GB:P16180 [Arabidopsis thaliana]
Length = 149
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 369 EIGDIVTIGECRPLSKTVRFNVLKV 443
++GD+V + + RP+SKT F L V
Sbjct: 99 KVGDVVRLEKSRPISKTKSFVALPV 123
>At5g50640.1 68418.m06274 CBS domain-containing protein /
octicosapeptide/Phox/Bemp1 (PB1) domain-containing
protein contains Pfam profiles: PF00571 CBS domain,
PF00564: PB1 domain
Length = 548
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 28 GGSDRESVSETGHRFPEQERWHEEEG 105
GG R+S+S +GH F +++ E EG
Sbjct: 5 GGPSRKSLSFSGHSFQGRKKASENEG 30
>At5g50530.1 68418.m06258 CBS domain-containing protein /
octicosapeptide/Phox/Bemp1 (PB1) domain-containing
protein contains Pfam profiles: PF00571 CBS domain,
PF00564: PB1 domain
Length = 548
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 28 GGSDRESVSETGHRFPEQERWHEEEG 105
GG R+S+S +GH F +++ E EG
Sbjct: 5 GGPSRKSLSFSGHSFQGRKKASENEG 30
>At5g40100.1 68418.m04864 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1017
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -2
Query: 408 KVCIRRSLQYHQSPRXLKQGDKCTDIFLCRFS 313
K+ R++ HQ+PR + + +K T + + RFS
Sbjct: 740 KIHATRTVSVHQAPRLISELNKSTTLNIRRFS 771
>At1g61380.1 68414.m06917 S-locus protein kinase, putative similar
to KI domain interacting kinase 1 [Zea mays]
gi|2735017|gb|AAB93834; contains S-locus glycoprotein
family domain, Pfam:PF00954
Length = 805
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 414 WTKVCIRRSLQYHQSPRXLKQGDKCTDIF 328
WT C+RR+ Q+ +K K TDIF
Sbjct: 320 WTSGCVRRTKLSCQAKSSMKTQGKDTDIF 348
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,727,552
Number of Sequences: 28952
Number of extensions: 216283
Number of successful extensions: 483
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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