Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_L18
         (485 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          23   1.5  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           23   1.5  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   1.5  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   4.5  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    21   5.9  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   7.9  

>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -2

Query: 439 ASWSCXMFTSPRYM*SIM 386
           + W+C  + +P YM S++
Sbjct: 50  SDWNCPQYNAPPYMSSVL 67


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -2

Query: 439 ASWSCXMFTSPRYM*SIM 386
           + W+C  + +P YM S++
Sbjct: 41  SDWNCPQYNAPPYMSSVL 58


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 14/48 (29%), Positives = 18/48 (37%)
 Frame = -3

Query: 237 SPHACPSPKACRTLKPASTDGCSTAGRTVDRHPLCPLAAHRAHRGPNH 94
           SP A P  + CR  +     G S+      RH L     H  H   +H
Sbjct: 241 SPRARPLARTCRDNRLLVLAGTSSPSNRFTRH-LIQRRTHTRHTTTSH 287


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -1

Query: 149 IVIHYALLPLTAPIAAQITTWDEITL 72
           +V H+  LPLT  +      W+E+ +
Sbjct: 231 LVPHFTSLPLTDQVQLLRAGWNELLI 256


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 105 RDGRGERQEGIMDDDQQFC 161
           RDG+G+     +D   QFC
Sbjct: 32  RDGQGKFDVNFIDPALQFC 50


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 234 PHACPSPKACRTLKPASTDGCSTA 163
           P +  SP+  R  KP +  G  TA
Sbjct: 203 PSSGRSPRTRRVKKPGAKQGAPTA 226


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,403
Number of Sequences: 336
Number of extensions: 1954
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11315916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)